JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
COL5A2_chr2_189026898_189184761	0/0	c0002	4500	29	5	2	15	2	5	copy fasta	COL5A2	chr2	189026898	189184761
COL5A2_chr2_189026898_189184761	1/0	c0003	4500	25	4	10	10	0	0	copy fasta	COL5A2	chr2	189026898	189184761
COL5A2_chr2_189026898_189184761	0/0	c0004	4500	17	3	1	7	0	6	copy fasta	COL5A2	chr2	189026898	189184761
COL5A2_chr2_189026898_189184761	0/0	c0005	4500	4	0	0	4	0	0	copy fasta	COL5A2	chr2	189026898	189184761
COL5A2_chr2_189026898_189184761	0/0	c0006	4500	3	0	1	1	0	1	copy fasta	COL5A2	chr2	189026898	189184761
COL5A2_chr2_189026898_189184761	0/0	c0007	4500	3	0	0	3	0	0	copy fasta	COL5A2	chr2	189026898	189184761
COL5A2_chr2_189026898_189184761	0/0	c0008	4500	3	0	0	3	0	0	copy fasta	COL5A2	chr2	189026898	189184761
COL5A2_chr2_189026898_189184761	0/0	c0009	4500	2	0	1	0	1	0	copy fasta	COL5A2	chr2	189026898	189184761
COL5A2_chr2_189026898_189184761	0/0	c0010	4500	2	0	0	2	0	0	copy fasta	COL5A2	chr2	189026898	189184761
COL5A2_chr2_189026898_189184761	0/0	c0011	4500	2	0	0	2	0	0	copy fasta	COL5A2	chr2	189026898	189184761
COL5A2_chr2_189026898_189184761	0/0	c0012	4500	2	2	0	0	0	0	copy fasta	COL5A2	chr2	189026898	189184761
COL5A2_chr2_189026898_189184761	0/0	c0013	4500	2	2	0	0	0	0	copy fasta	COL5A2	chr2	189026898	189184761
COL5A2_chr2_189026898_189184761	0/0	c0014	4500	2	0	2	0	0	0	copy fasta	COL5A2	chr2	189026898	189184761
COL5A2_chr2_189026898_189184761	0/0	c0015	4500	1	0	0	0	0	1	copy fasta	COL5A2	chr2	189026898	189184761
COL5A2_chr2_189026898_189184761	0/0	c0016	4500	1	0	1	0	0	0	copy fasta	COL5A2	chr2	189026898	189184761
COL5A2_chr2_189026898_189184761	0/0	c0017	4500	1	1	0	0	0	0	copy fasta	COL5A2	chr2	189026898	189184761
COL5A2_chr2_189026898_189184761	0/0	c0018	4500	1	1	0	0	0	0	copy fasta	COL5A2	chr2	189026898	189184761
COL5A2_chr2_189026898_189184761	0/0	c0019	4500	1	0	0	1	0	0	copy fasta	COL5A2	chr2	189026898	189184761
COL5A2_chr2_189026898_189184761	0/0	c0020	4500	1	0	0	1	0	0	copy fasta	COL5A2	chr2	189026898	189184761
COL5A2_chr2_189026898_189184761	0/0	c0021	4500	1	0	0	1	0	0	copy fasta	COL5A2	chr2	189026898	189184761
COL5A2_chr2_189026898_189184761	0/0	c0022	4500	1	0	0	1	0	0	copy fasta	COL5A2	chr2	189026898	189184761
COL5A2_chr2_189026898_189184761	0/0	c0023	4500	1	1	0	0	0	0	copy fasta	COL5A2	chr2	189026898	189184761
COL5A2_chr2_189026898_189184761	0/0	c0024	4500	1	1	0	0	0	0	copy fasta	COL5A2	chr2	189026898	189184761
COL5A2_chr2_189026898_189184761	0/0	c0025	4500	1	1	0	0	0	0	copy fasta	COL5A2	chr2	189026898	189184761
COL5A2_chr2_189026898_189184761	0/0	c0026	4500	1	0	1	0	0	0	copy fasta	COL5A2	chr2	189026898	189184761
COL5A2_chr2_189026898_189184761	0/0	c0027	4500	1	0	1	0	0	0	copy fasta	COL5A2	chr2	189026898	189184761
COL5A2_chr2_189026898_189184761	0/0	c0028	4500	1	1	0	0	0	0	copy fasta	COL5A2	chr2	189026898	189184761
COL5A2_chr2_189026898_189184761	0/0	c0029	4500	1	0	0	0	0	1	copy fasta	COL5A2	chr2	189026898	189184761
COL5A2_chr2_189026898_189184761	0/0	c0030	4500	1	1	0	0	0	0	copy fasta	COL5A2	chr2	189026898	189184761
COL5A3_chr19_9954561_10015504	0/1	c0001	5238	57	1	17	29	3	6	copy fasta	COL5A3	chr19	9954561	10015504
COL5A3_chr19_9954561_10015504	0/0	c0002	5238	21	0	7	13	0	1	copy fasta	COL5A3	chr19	9954561	10015504
COL5A3_chr19_9954561_10015504	0/0	c0003	5238	17	1	1	7	4	4	copy fasta	COL5A3	chr19	9954561	10015504
COL5A3_chr19_9954561_10015504	0/0	c0004	5238	13	0	3	3	2	5	copy fasta	COL5A3	chr19	9954561	10015504
COL5A3_chr19_9954561_10015504	0/0	c0005	5238	11	0	1	7	0	3	copy fasta	COL5A3	chr19	9954561	10015504
COL5A3_chr19_9954561_10015504	0/0	c0006	5238	11	0	1	7	0	3	copy fasta	COL5A3	chr19	9954561	10015504
COL5A3_chr19_9954561_10015504	0/0	c0007	5238	11	1	5	5	0	0	copy fasta	COL5A3	chr19	9954561	10015504
COL5A3_chr19_9954561_10015504	0/0	c0008	5238	10	10	0	0	0	0	copy fasta	COL5A3	chr19	9954561	10015504
COL5A3_chr19_9954561_10015504	0/0	c0009	5238	9	1	0	8	0	0	copy fasta	COL5A3	chr19	9954561	10015504
COL5A3_chr19_9954561_10015504	0/0	c0010	5238	8	0	0	6	0	2	copy fasta	COL5A3	chr19	9954561	10015504
COL5A3_chr19_9954561_10015504	0/0	c0011	5238	8	1	1	3	1	2	copy fasta	COL5A3	chr19	9954561	10015504
COL5A3_chr19_9954561_10015504	0/0	c0012	5238	7	7	0	0	0	0	copy fasta	COL5A3	chr19	9954561	10015504
COL5A3_chr19_9954561_10015504	0/0	c0013	5238	6	0	0	6	0	0	copy fasta	COL5A3	chr19	9954561	10015504
COL5A3_chr19_9954561_10015504	0/0	c0014	5238	6	0	0	6	0	0	copy fasta	COL5A3	chr19	9954561	10015504
COL5A3_chr19_9954561_10015504	0/0	c0015	5238	6	0	2	3	0	1	copy fasta	COL5A3	chr19	9954561	10015504
COL5A3_chr19_9954561_10015504	0/0	c0016	5238	6	0	3	3	0	0	copy fasta	COL5A3	chr19	9954561	10015504
COL5A3_chr19_9954561_10015504	0/0	c0017	5238	5	0	0	5	0	0	copy fasta	COL5A3	chr19	9954561	10015504
COL5A3_chr19_9954561_10015504	0/0	c0018	5238	5	0	3	0	1	1	copy fasta	COL5A3	chr19	9954561	10015504
COL5A3_chr19_9954561_10015504	1/0	c0019	5238	5	0	0	3	1	0	copy fasta	COL5A3	chr19	9954561	10015504
COL5A3_chr19_9954561_10015504	0/0	c0020	5238	5	0	1	4	0	0	copy fasta	COL5A3	chr19	9954561	10015504
COL5A3_chr19_9954561_10015504	0/0	c0021	5238	5	5	0	0	0	0	copy fasta	COL5A3	chr19	9954561	10015504