JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
COL6A2_chr21_46093112_46137848	0/0	c0051	3060	1	1	0	0	0	0	copy fasta	COL6A2	chr21	46093112	46137848
COL6A2_chr21_46093112_46137848	0/0	c0052	3060	1	0	0	1	0	0	copy fasta	COL6A2	chr21	46093112	46137848
COL6A2_chr21_46093112_46137848	0/0	c0053	3060	1	0	0	0	1	0	copy fasta	COL6A2	chr21	46093112	46137848
COL6A2_chr21_46093112_46137848	0/0	c0054	3060	1	0	1	0	0	0	copy fasta	COL6A2	chr21	46093112	46137848
COL6A2_chr21_46093112_46137848	0/0	c0055	3060	1	0	0	0	0	1	copy fasta	COL6A2	chr21	46093112	46137848
COL6A2_chr21_46093112_46137848	0/0	c0056	3060	1	1	0	0	0	0	copy fasta	COL6A2	chr21	46093112	46137848
COL6A2_chr21_46093112_46137848	0/0	c0057	3060	1	0	0	0	0	1	copy fasta	COL6A2	chr21	46093112	46137848
COL6A2_chr21_46093112_46137848	0/0	c0058	3060	1	1	0	0	0	0	copy fasta	COL6A2	chr21	46093112	46137848
COL6A2_chr21_46093112_46137848	0/0	c0059	3060	1	1	0	0	0	0	copy fasta	COL6A2	chr21	46093112	46137848
COL6A2_chr21_46093112_46137848	0/0	c0060	3060	1	1	0	0	0	0	copy fasta	COL6A2	chr21	46093112	46137848
COL6A2_chr21_46093112_46137848	0/0	c0061	3060	1	1	0	0	0	0	copy fasta	COL6A2	chr21	46093112	46137848
COL6A2_chr21_46093112_46137848	0/0	c0062	3060	1	1	0	0	0	0	copy fasta	COL6A2	chr21	46093112	46137848
COL6A2_chr21_46093112_46137848	0/0	c0063	3060	1	1	0	0	0	0	copy fasta	COL6A2	chr21	46093112	46137848
COL6A2_chr21_46093112_46137848	0/0	c0064	3060	1	0	1	0	0	0	copy fasta	COL6A2	chr21	46093112	46137848
COL6A2_chr21_46093112_46137848	0/0	c0065	3060	1	0	0	1	0	0	copy fasta	COL6A2	chr21	46093112	46137848
COL6A2_chr21_46093112_46137848	0/0	c0066	3060	1	0	0	1	0	0	copy fasta	COL6A2	chr21	46093112	46137848
COL6A3_chr2_237319018_237419164	1/0	c0001	9534	39	1	8	17	0	12	copy fasta	COL6A3	chr2	237319018	237419164
COL6A3_chr2_237319018_237419164	0/0	c0002	9534	33	5	8	13	2	5	copy fasta	COL6A3	chr2	237319018	237419164
COL6A3_chr2_237319018_237419164	0/0	c0003	9534	11	0	0	8	0	3	copy fasta	COL6A3	chr2	237319018	237419164
COL6A3_chr2_237319018_237419164	0/0	c0004	9534	9	0	0	7	0	2	copy fasta	COL6A3	chr2	237319018	237419164
COL6A3_chr2_237319018_237419164	0/0	c0005	9534	9	0	2	4	0	3	copy fasta	COL6A3	chr2	237319018	237419164
COL6A3_chr2_237319018_237419164	0/0	c0006	9534	8	0	0	7	0	1	copy fasta	COL6A3	chr2	237319018	237419164
COL6A3_chr2_237319018_237419164	0/0	c0007	9534	7	0	0	7	0	0	copy fasta	COL6A3	chr2	237319018	237419164
COL6A3_chr2_237319018_237419164	0/0	c0008	9534	7	7	0	0	0	0	copy fasta	COL6A3	chr2	237319018	237419164
COL6A3_chr2_237319018_237419164	0/0	c0009	9534	6	0	5	0	0	1	copy fasta	COL6A3	chr2	237319018	237419164
COL6A3_chr2_237319018_237419164	0/0	c0010	9534	5	1	4	0	0	0	copy fasta	COL6A3	chr2	237319018	237419164
COL6A3_chr2_237319018_237419164	0/1	c0011	9531	5	1	2	0	1	0	copy fasta	COL6A3	chr2	237319018	237419164
COL6A3_chr2_237319018_237419164	0/0	c0012	9534	5	1	1	0	0	3	copy fasta	COL6A3	chr2	237319018	237419164
COL6A3_chr2_237319018_237419164	0/0	c0013	9534	4	0	0	4	0	0	copy fasta	COL6A3	chr2	237319018	237419164
COL6A3_chr2_237319018_237419164	0/0	c0014	9534	4	4	0	0	0	0	copy fasta	COL6A3	chr2	237319018	237419164
COL6A3_chr2_237319018_237419164	0/0	c0015	9534	4	0	1	3	0	0	copy fasta	COL6A3	chr2	237319018	237419164
COL6A3_chr2_237319018_237419164	0/0	c0016	9534	4	0	0	2	0	2	copy fasta	COL6A3	chr2	237319018	237419164
COL6A3_chr2_237319018_237419164	0/0	c0017	9534	4	0	3	0	1	0	copy fasta	COL6A3	chr2	237319018	237419164
COL6A3_chr2_237319018_237419164	0/0	c0018	9534	4	4	0	0	0	0	copy fasta	COL6A3	chr2	237319018	237419164
COL6A3_chr2_237319018_237419164	0/0	c0019	9534	3	0	0	3	0	0	copy fasta	COL6A3	chr2	237319018	237419164
COL6A3_chr2_237319018_237419164	0/0	c0020	9534	3	0	2	0	0	1	copy fasta	COL6A3	chr2	237319018	237419164
COL6A3_chr2_237319018_237419164	0/0	c0021	9534	3	0	0	3	0	0	copy fasta	COL6A3	chr2	237319018	237419164
COL6A3_chr2_237319018_237419164	0/0	c0022	9534	3	0	0	3	0	0	copy fasta	COL6A3	chr2	237319018	237419164
COL6A3_chr2_237319018_237419164	0/0	c0023	9534	2	0	0	1	0	1	copy fasta	COL6A3	chr2	237319018	237419164
COL6A3_chr2_237319018_237419164	0/0	c0024	9534	2	0	2	0	0	0	copy fasta	COL6A3	chr2	237319018	237419164
COL6A3_chr2_237319018_237419164	0/0	c0025	9534	2	0	1	1	0	0	copy fasta	COL6A3	chr2	237319018	237419164
COL6A3_chr2_237319018_237419164	0/0	c0026	9534	2	2	0	0	0	0	copy fasta	COL6A3	chr2	237319018	237419164
COL6A3_chr2_237319018_237419164	0/0	c0027	9534	2	2	0	0	0	0	copy fasta	COL6A3	chr2	237319018	237419164
COL6A3_chr2_237319018_237419164	0/0	c0028	9534	2	2	0	0	0	0	copy fasta	COL6A3	chr2	237319018	237419164
COL6A3_chr2_237319018_237419164	0/0	c0029	9534	2	2	0	0	0	0	copy fasta	COL6A3	chr2	237319018	237419164
COL6A3_chr2_237319018_237419164	0/0	c0030	9531	2	0	0	2	0	0	copy fasta	COL6A3	chr2	237319018	237419164
COL6A3_chr2_237319018_237419164	0/0	c0031	9534	2	2	0	0	0	0	copy fasta	COL6A3	chr2	237319018	237419164
COL6A3_chr2_237319018_237419164	0/0	c0032	9534	2	0	2	0	0	0	copy fasta	COL6A3	chr2	237319018	237419164
COL6A3_chr2_237319018_237419164	0/0	c0033	9534	2	1	0	1	0	0	copy fasta	COL6A3	chr2	237319018	237419164
COL6A3_chr2_237319018_237419164	0/0	c0034	9534	2	2	0	0	0	0	copy fasta	COL6A3	chr2	237319018	237419164