JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
COLEC10_chr8_119062247_119113455	0/0	c0003	834	7	6	0	0	1	0	copy fasta	COLEC10	chr8	119062247	119113455
COLEC10_chr8_119062247_119113455	0/0	c0004	834	3	0	0	3	0	0	copy fasta	COLEC10	chr8	119062247	119113455
COLEC10_chr8_119062247_119113455	0/0	c0005	834	2	2	0	0	0	0	copy fasta	COLEC10	chr8	119062247	119113455
COLEC10_chr8_119062247_119113455	0/0	c0006	834	1	1	0	0	0	0	copy fasta	COLEC10	chr8	119062247	119113455
COLEC10_chr8_119062247_119113455	0/0	c0007	834	1	1	0	0	0	0	copy fasta	COLEC10	chr8	119062247	119113455
COLEC11_chr2_3590112_3649644	1/1	c0001	816	280	21	67	144	15	31	copy fasta	COLEC11	chr2	3590112	3649644
COLEC11_chr2_3590112_3649644	0/0	c0002	816	50	46	3	0	0	1	copy fasta	COLEC11	chr2	3590112	3649644
COLEC11_chr2_3590112_3649644	0/0	c0003	816	13	2	3	4	1	3	copy fasta	COLEC11	chr2	3590112	3649644
COLEC11_chr2_3590112_3649644	0/0	c0004	816	9	9	0	0	0	0	copy fasta	COLEC11	chr2	3590112	3649644
COLEC11_chr2_3590112_3649644	0/0	c0005	816	8	8	0	0	0	0	copy fasta	COLEC11	chr2	3590112	3649644
COLEC11_chr2_3590112_3649644	0/0	c0006	816	6	5	1	0	0	0	copy fasta	COLEC11	chr2	3590112	3649644
COLEC11_chr2_3590112_3649644	0/0	c0007	816	3	1	0	0	0	2	copy fasta	COLEC11	chr2	3590112	3649644
COLEC11_chr2_3590112_3649644	0/0	c0008	816	2	2	0	0	0	0	copy fasta	COLEC11	chr2	3590112	3649644
COLEC11_chr2_3590112_3649644	0/0	c0009	816	1	1	0	0	0	0	copy fasta	COLEC11	chr2	3590112	3649644
COLEC11_chr2_3590112_3649644	0/0	c0010	816	1	1	0	0	0	0	copy fasta	COLEC11	chr2	3590112	3649644
COLEC11_chr2_3590112_3649644	0/0	c0011	816	1	1	0	0	0	0	copy fasta	COLEC11	chr2	3590112	3649644
COLEC11_chr2_3590112_3649644	0/0	c0012	816	1	1	0	0	0	0	copy fasta	COLEC11	chr2	3590112	3649644
COLEC11_chr2_3590112_3649644	0/0	c0013	816	1	0	0	1	0	0	copy fasta	COLEC11	chr2	3590112	3649644
COLEC11_chr2_3590112_3649644	0/0	c0014	816	1	0	0	0	0	1	copy fasta	COLEC11	chr2	3590112	3649644
COLEC11_chr2_3590112_3649644	0/0	c0015	816	1	0	0	1	0	0	copy fasta	COLEC11	chr2	3590112	3649644
COLEC12_chr18_311737_505701	0/1	c0001	2229	100	18	23	43	7	8	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	c0002	2229	92	27	7	46	0	12	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	c0003	2229	71	11	14	38	3	5	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	1/0	c0004	2229	31	7	8	4	2	9	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	c0005	2229	20	14	3	2	0	1	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	c0006	2229	12	7	4	0	1	0	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	c0007	2229	10	0	5	1	0	4	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	c0008	2229	4	0	3	0	0	1	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	c0009	2229	3	3	0	0	0	0	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	c0010	2229	2	1	0	0	0	1	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	c0011	2229	2	0	0	2	0	0	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	c0012	2229	2	0	0	2	0	0	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	c0013	2229	2	2	0	0	0	0	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	c0014	2229	2	0	0	0	0	2	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	c0015	2229	1	0	1	0	0	0	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	c0016	2229	1	0	0	1	0	0	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	c0017	2229	1	1	0	0	0	0	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	c0018	2229	1	0	0	0	0	1	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	c0019	2229	1	0	0	0	1	0	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	c0020	2229	1	0	1	0	0	0	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	c0021	2229	1	0	0	0	1	0	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	c0022	2229	1	0	1	0	0	0	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	c0023	2229	1	0	1	0	0	0	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	c0024	2229	1	0	0	0	1	0	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	c0025	2229	1	1	0	0	0	0	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	c0026	2229	1	0	1	0	0	0	copy fasta	COLEC12	chr18	311737	505701
COLEC12_chr18_311737_505701	0/0	c0027	2229	1	0	0	1	0	0	copy fasta	COLEC12	chr18	311737	505701
COLGALT1_chr19_17550649_17588157	1/1	c0001	1869	190	51	26	84	5	22	copy fasta	COLGALT1	chr19	17550649	17588157
COLGALT1_chr19_17550649_17588157	0/0	c0002	1869	115	15	25	43	11	21	copy fasta	COLGALT1	chr19	17550649	17588157
COLGALT1_chr19_17550649_17588157	0/0	c0003	1869	43	0	18	22	0	3	copy fasta	COLGALT1	chr19	17550649	17588157