Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ADAMTS15_chr11_130443645_130481645	0/0	c0021	2853	1	1	0	0	0	0	copy fasta	ADAMTS15	chr11	130443645	130481645
ADAMTS15_chr11_130443645_130481645	0/0	c0022	2853	1	1	0	0	0	0	copy fasta	ADAMTS15	chr11	130443645	130481645
ADAMTS15_chr11_130443645_130481645	0/0	c0023	2853	1	1	0	0	0	0	copy fasta	ADAMTS15	chr11	130443645	130481645
ADAMTS15_chr11_130443645_130481645	0/0	c0024	2853	1	0	0	1	0	0	copy fasta	ADAMTS15	chr11	130443645	130481645
ADAMTS15_chr11_130443645_130481645	0/0	c0025	2853	1	1	0	0	0	0	copy fasta	ADAMTS15	chr11	130443645	130481645
ADAMTS15_chr11_130443645_130481645	0/0	c0026	2853	1	1	0	0	0	0	copy fasta	ADAMTS15	chr11	130443645	130481645
ADAMTS15_chr11_130443645_130481645	0/0	c0027	2853	1	1	0	0	0	0	copy fasta	ADAMTS15	chr11	130443645	130481645
ADAMTS15_chr11_130443645_130481645	0/0	c0028	2853	1	1	0	0	0	0	copy fasta	ADAMTS15	chr11	130443645	130481645
ADAMTS15_chr11_130443645_130481645	0/0	c0029	2853	1	1	0	0	0	0	copy fasta	ADAMTS15	chr11	130443645	130481645
ADAMTS15_chr11_130443645_130481645	0/0	c0030	2853	1	1	0	0	0	0	copy fasta	ADAMTS15	chr11	130443645	130481645
ADAMTS15_chr11_130443645_130481645	0/0	c0031	2853	1	1	0	0	0	0	copy fasta	ADAMTS15	chr11	130443645	130481645
ADAMTS15_chr11_130443645_130481645	0/0	c0032	2853	1	0	0	1	0	0	copy fasta	ADAMTS15	chr11	130443645	130481645
ADAMTS15_chr11_130443645_130481645	0/0	c0033	2853	1	0	0	1	0	0	copy fasta	ADAMTS15	chr11	130443645	130481645
ADAMTS15_chr11_130443645_130481645	0/0	c0034	2853	1	1	0	0	0	0	copy fasta	ADAMTS15	chr11	130443645	130481645
ADAMTS15_chr11_130443645_130481645	0/0	c0035	2853	1	1	0	0	0	0	copy fasta	ADAMTS15	chr11	130443645	130481645
ADAMTS15_chr11_130443645_130481645	0/0	c0036	2853	1	1	0	0	0	0	copy fasta	ADAMTS15	chr11	130443645	130481645
ADAMTS15_chr11_130443645_130481645	0/0	c0037	2853	1	0	1	0	0	0	copy fasta	ADAMTS15	chr11	130443645	130481645
ADAMTS15_chr11_130443645_130481645	0/0	c0038	2853	1	0	1	0	0	0	copy fasta	ADAMTS15	chr11	130443645	130481645
ADAMTS15_chr11_130443645_130481645	0/0	c0039	2853	1	0	0	1	0	0	copy fasta	ADAMTS15	chr11	130443645	130481645
ADAMTS15_chr11_130443645_130481645	0/0	c0040	2853	1	0	1	0	0	0	copy fasta	ADAMTS15	chr11	130443645	130481645
ADAMTS15_chr11_130443645_130481645	0/0	c0041	2853	1	0	0	1	0	0	copy fasta	ADAMTS15	chr11	130443645	130481645
ADAMTS15_chr11_130443645_130481645	0/0	c0042	2853	1	0	0	1	0	0	copy fasta	ADAMTS15	chr11	130443645	130481645
ADAMTS16_chr5_5135330_5325304	0/0	c0001	3675	56	16	15	18	3	4	copy fasta	ADAMTS16	chr5	5135330	5325304
ADAMTS16_chr5_5135330_5325304	0/0	c0002	3675	40	4	15	8	3	10	copy fasta	ADAMTS16	chr5	5135330	5325304
ADAMTS16_chr5_5135330_5325304	0/0	c0003	3675	16	0	6	10	0	0	copy fasta	ADAMTS16	chr5	5135330	5325304
ADAMTS16_chr5_5135330_5325304	0/0	c0004	3675	15	3	0	9	0	3	copy fasta	ADAMTS16	chr5	5135330	5325304
ADAMTS16_chr5_5135330_5325304	0/0	c0005	3675	14	4	6	0	1	3	copy fasta	ADAMTS16	chr5	5135330	5325304
ADAMTS16_chr5_5135330_5325304	0/0	c0006	3675	12	4	2	6	0	0	copy fasta	ADAMTS16	chr5	5135330	5325304
ADAMTS16_chr5_5135330_5325304	0/0	c0007	3675	12	2	0	7	1	2	copy fasta	ADAMTS16	chr5	5135330	5325304
ADAMTS16_chr5_5135330_5325304	0/0	c0008	3675	10	0	0	10	0	0	copy fasta	ADAMTS16	chr5	5135330	5325304
ADAMTS16_chr5_5135330_5325304	0/0	c0009	3675	8	7	0	0	0	1	copy fasta	ADAMTS16	chr5	5135330	5325304
ADAMTS16_chr5_5135330_5325304	0/0	c0010	3675	7	4	0	0	3	0	copy fasta	ADAMTS16	chr5	5135330	5325304
ADAMTS16_chr5_5135330_5325304	0/0	c0011	3675	6	0	0	6	0	0	copy fasta	ADAMTS16	chr5	5135330	5325304
ADAMTS16_chr5_5135330_5325304	0/0	c0012	3675	6	0	0	6	0	0	copy fasta	ADAMTS16	chr5	5135330	5325304
ADAMTS16_chr5_5135330_5325304	0/0	c0013	3675	6	0	4	1	0	1	copy fasta	ADAMTS16	chr5	5135330	5325304
ADAMTS16_chr5_5135330_5325304	0/0	c0014	3675	5	0	0	5	0	0	copy fasta	ADAMTS16	chr5	5135330	5325304
ADAMTS16_chr5_5135330_5325304	0/0	c0015	3675	5	0	0	5	0	0	copy fasta	ADAMTS16	chr5	5135330	5325304
ADAMTS16_chr5_5135330_5325304	0/0	c0016	3675	5	0	0	4	0	1	copy fasta	ADAMTS16	chr5	5135330	5325304
ADAMTS16_chr5_5135330_5325304	0/0	c0017	3675	5	3	2	0	0	0	copy fasta	ADAMTS16	chr5	5135330	5325304
ADAMTS16_chr5_5135330_5325304	0/0	c0018	3675	5	4	1	0	0	0	copy fasta	ADAMTS16	chr5	5135330	5325304
ADAMTS16_chr5_5135330_5325304	0/0	c0019	3675	5	2	0	3	0	0	copy fasta	ADAMTS16	chr5	5135330	5325304
ADAMTS16_chr5_5135330_5325304	0/0	c0020	3675	4	3	1	0	0	0	copy fasta	ADAMTS16	chr5	5135330	5325304
ADAMTS16_chr5_5135330_5325304	0/0	c0021	3675	4	0	1	2	1	0	copy fasta	ADAMTS16	chr5	5135330	5325304
ADAMTS16_chr5_5135330_5325304	0/0	c0022	3675	4	0	2	0	0	2	copy fasta	ADAMTS16	chr5	5135330	5325304
ADAMTS16_chr5_5135330_5325304	0/0	c0023	3675	4	1	3	0	0	0	copy fasta	ADAMTS16	chr5	5135330	5325304
ADAMTS16_chr5_5135330_5325304	0/0	c0024	3675	3	3	0	0	0	0	copy fasta	ADAMTS16	chr5	5135330	5325304
ADAMTS16_chr5_5135330_5325304	0/0	c0025	3675	3	0	0	3	0	0	copy fasta	ADAMTS16	chr5	5135330	5325304
ADAMTS16_chr5_5135330_5325304	0/0	c0026	3675	3	0	0	3	0	0	copy fasta	ADAMTS16	chr5	5135330	5325304
ADAMTS16_chr5_5135330_5325304	1/0	c0027	3675	3	0	0	1	0	1	copy fasta	ADAMTS16	chr5	5135330	5325304
ADAMTS16_chr5_5135330_5325304	0/0	c0028	3675	2	0	0	2	0	0	copy fasta	ADAMTS16	chr5	5135330	5325304