JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
COLGALT1_chr19_17550649_17588157	0/0	c0004	1869	19	16	3	0	0	0	copy fasta	COLGALT1	chr19	17550649	17588157
COLGALT1_chr19_17550649_17588157	0/0	c0005	1869	7	7	0	0	0	0	copy fasta	COLGALT1	chr19	17550649	17588157
COLGALT1_chr19_17550649_17588157	0/0	c0006	1870	5	0	1	4	0	0	copy fasta	COLGALT1	chr19	17550649	17588157
COLGALT1_chr19_17550649_17588157	0/0	c0007	1869	4	4	0	0	0	0	copy fasta	COLGALT1	chr19	17550649	17588157
COLGALT1_chr19_17550649_17588157	0/0	c0008	1869	2	0	0	2	0	0	copy fasta	COLGALT1	chr19	17550649	17588157
COLGALT1_chr19_17550649_17588157	0/0	c0009	1869	2	0	2	0	0	0	copy fasta	COLGALT1	chr19	17550649	17588157
COLGALT1_chr19_17550649_17588157	0/0	c0010	1870	2	0	1	1	0	0	copy fasta	COLGALT1	chr19	17550649	17588157
COLGALT1_chr19_17550649_17588157	0/0	c0011	1869	1	1	0	0	0	0	copy fasta	COLGALT1	chr19	17550649	17588157
COLGALT1_chr19_17550649_17588157	0/0	c0012	1869	1	1	0	0	0	0	copy fasta	COLGALT1	chr19	17550649	17588157
COLGALT1_chr19_17550649_17588157	0/0	c0013	1869	1	0	0	1	0	0	copy fasta	COLGALT1	chr19	17550649	17588157
COLGALT1_chr19_17550649_17588157	0/0	c0014	1870	1	0	0	1	0	0	copy fasta	COLGALT1	chr19	17550649	17588157
COLGALT1_chr19_17550649_17588157	0/0	c0015	1869	1	0	0	1	0	0	copy fasta	COLGALT1	chr19	17550649	17588157
COLGALT1_chr19_17550649_17588157	0/0	c0016	1869	1	1	0	0	0	0	copy fasta	COLGALT1	chr19	17550649	17588157
COLGALT1_chr19_17550649_17588157	0/0	c0017	1869	1	0	0	1	0	0	copy fasta	COLGALT1	chr19	17550649	17588157
COLGALT2_chr1_183930834_184042728	1/1	c0001	1881	239	69	53	74	10	31	copy fasta	COLGALT2	chr1	183930834	184042728
COLGALT2_chr1_183930834_184042728	0/0	c0002	1881	56	6	13	29	3	5	copy fasta	COLGALT2	chr1	183930834	184042728
COLGALT2_chr1_183930834_184042728	0/0	c0003	1881	10	0	0	10	0	0	copy fasta	COLGALT2	chr1	183930834	184042728
COLGALT2_chr1_183930834_184042728	0/0	c0004	1881	9	3	1	4	0	1	copy fasta	COLGALT2	chr1	183930834	184042728
COLGALT2_chr1_183930834_184042728	0/0	c0005	1881	4	4	0	0	0	0	copy fasta	COLGALT2	chr1	183930834	184042728
COLGALT2_chr1_183930834_184042728	0/0	c0006	1881	3	0	0	2	0	1	copy fasta	COLGALT2	chr1	183930834	184042728
COLGALT2_chr1_183930834_184042728	0/0	c0007	1881	2	0	0	2	0	0	copy fasta	COLGALT2	chr1	183930834	184042728
COLGALT2_chr1_183930834_184042728	0/0	c0008	1881	2	1	1	0	0	0	copy fasta	COLGALT2	chr1	183930834	184042728
COLGALT2_chr1_183930834_184042728	0/0	c0009	1881	2	0	0	2	0	0	copy fasta	COLGALT2	chr1	183930834	184042728
COLGALT2_chr1_183930834_184042728	0/0	c0010	1881	1	0	0	0	0	1	copy fasta	COLGALT2	chr1	183930834	184042728
COLGALT2_chr1_183930834_184042728	0/0	c0011	1881	1	0	0	1	0	0	copy fasta	COLGALT2	chr1	183930834	184042728
COLGALT2_chr1_183930834_184042728	0/0	c0012	1881	1	0	0	1	0	0	copy fasta	COLGALT2	chr1	183930834	184042728
COLGALT2_chr1_183930834_184042728	0/0	c0013	1881	1	1	0	0	0	0	copy fasta	COLGALT2	chr1	183930834	184042728
COLGALT2_chr1_183930834_184042728	0/0	c0014	1881	1	1	0	0	0	0	copy fasta	COLGALT2	chr1	183930834	184042728
COLGALT2_chr1_183930834_184042728	0/0	c0015	1881	1	0	0	1	0	0	copy fasta	COLGALT2	chr1	183930834	184042728
COLGALT2_chr1_183930834_184042728	0/0	c0016	1881	1	0	0	1	0	0	copy fasta	COLGALT2	chr1	183930834	184042728
COLGALT2_chr1_183930834_184042728	0/0	c0017	1881	1	1	0	0	0	0	copy fasta	COLGALT2	chr1	183930834	184042728
COLGALT2_chr1_183930834_184042728	0/0	c0018	1881	1	0	0	1	0	0	copy fasta	COLGALT2	chr1	183930834	184042728
COLGALT2_chr1_183930834_184042728	0/0	c0019	1881	1	0	0	0	1	0	copy fasta	COLGALT2	chr1	183930834	184042728
COLGALT2_chr1_183930834_184042728	0/0	c0020	1881	1	0	0	0	0	1	copy fasta	COLGALT2	chr1	183930834	184042728
COLGALT2_chr1_183930834_184042728	0/0	c0021	1881	1	1	0	0	0	0	copy fasta	COLGALT2	chr1	183930834	184042728
COLGALT2_chr1_183930834_184042728	0/0	c0022	1881	1	1	0	0	0	0	copy fasta	COLGALT2	chr1	183930834	184042728
COLQ_chr3_15445133_15526706	1/1	c0001	1368	338	56	63	171	12	34	copy fasta	COLQ	chr3	15445133	15526706
COLQ_chr3_15445133_15526706	0/0	c0002	1368	17	17	0	0	0	0	copy fasta	COLQ	chr3	15445133	15526706
COLQ_chr3_15445133_15526706	0/0	c0003	1368	14	13	1	0	0	0	copy fasta	COLQ	chr3	15445133	15526706
COLQ_chr3_15445133_15526706	0/0	c0004	1368	6	6	0	0	0	0	copy fasta	COLQ	chr3	15445133	15526706
COLQ_chr3_15445133_15526706	0/0	c0005	1368	2	0	2	0	0	0	copy fasta	COLQ	chr3	15445133	15526706
COLQ_chr3_15445133_15526706	0/0	c0006	1368	2	0	0	2	0	0	copy fasta	COLQ	chr3	15445133	15526706
COLQ_chr3_15445133_15526706	0/0	c0007	1368	1	0	1	0	0	0	copy fasta	COLQ	chr3	15445133	15526706
COLQ_chr3_15445133_15526706	0/0	c0008	1368	1	0	0	1	0	0	copy fasta	COLQ	chr3	15445133	15526706
COLQ_chr3_15445133_15526706	0/0	c0009	1368	1	0	1	0	0	0	copy fasta	COLQ	chr3	15445133	15526706
COMMD10_chr5_116080025_116298287	1/0	c0001	609	169	42	31	71	5	19	copy fasta	COMMD10	chr5	116080025	116298287
COMMD10_chr5_116080025_116298287	0/1	c0002	609	111	13	26	52	5	14	copy fasta	COMMD10	chr5	116080025	116298287
COMMD10_chr5_116080025_116298287	0/0	c0003	609	61	24	4	30	2	1	copy fasta	COMMD10	chr5	116080025	116298287
COMMD10_chr5_116080025_116298287	0/0	c0004	609	4	4	0	0	0	0	copy fasta	COMMD10	chr5	116080025	116298287
COMMD10_chr5_116080025_116298287	0/0	c0005	609	3	2	1	0	0	0	copy fasta	COMMD10	chr5	116080025	116298287