JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CPO_chr2_206934518_206974474	0/0	c0018	1125	1	1	0	0	0	0	copy fasta	CPO	chr2	206934518	206974474
CPPED1_chr16_12654799_12808887	0/1	c0001	945	93	12	21	28	11	20	copy fasta	CPPED1	chr16	12654799	12808887
CPPED1_chr16_12654799_12808887	0/0	c0002	945	83	36	9	30	0	8	copy fasta	CPPED1	chr16	12654799	12808887
CPPED1_chr16_12654799_12808887	1/0	c0003	945	52	9	6	29	1	6	copy fasta	CPPED1	chr16	12654799	12808887
CPPED1_chr16_12654799_12808887	0/0	c0004	945	42	16	8	18	0	0	copy fasta	CPPED1	chr16	12654799	12808887
CPPED1_chr16_12654799_12808887	0/0	c0005	945	4	0	0	4	0	0	copy fasta	CPPED1	chr16	12654799	12808887
CPPED1_chr16_12654799_12808887	0/0	c0006	945	2	0	0	2	0	0	copy fasta	CPPED1	chr16	12654799	12808887
CPPED1_chr16_12654799_12808887	0/0	c0007	945	2	0	0	2	0	0	copy fasta	CPPED1	chr16	12654799	12808887
CPPED1_chr16_12654799_12808887	0/0	c0008	945	1	0	0	1	0	0	copy fasta	CPPED1	chr16	12654799	12808887
CPPED1_chr16_12654799_12808887	0/0	c0009	945	1	0	1	0	0	0	copy fasta	CPPED1	chr16	12654799	12808887
CPPED1_chr16_12654799_12808887	0/0	c0010	945	1	0	1	0	0	0	copy fasta	CPPED1	chr16	12654799	12808887
CPPED1_chr16_12654799_12808887	0/0	c0011	945	1	1	0	0	0	0	copy fasta	CPPED1	chr16	12654799	12808887
CPPED1_chr16_12654799_12808887	0/0	c0012	945	1	1	0	0	0	0	copy fasta	CPPED1	chr16	12654799	12808887
CPPED1_chr16_12654799_12808887	0/0	c0013	945	1	1	0	0	0	0	copy fasta	CPPED1	chr16	12654799	12808887
CPPED1_chr16_12654799_12808887	0/0	c0014	945	1	1	0	0	0	0	copy fasta	CPPED1	chr16	12654799	12808887
CPPED1_chr16_12654799_12808887	0/0	c0015	945	1	0	0	1	0	0	copy fasta	CPPED1	chr16	12654799	12808887
CPPED1_chr16_12654799_12808887	0/0	c0016	945	1	1	0	0	0	0	copy fasta	CPPED1	chr16	12654799	12808887
CPPED1_chr16_12654799_12808887	0/0	c0017	945	1	0	1	0	0	0	copy fasta	CPPED1	chr16	12654799	12808887
CPPED1_chr16_12654799_12808887	0/0	c0018	945	1	0	0	1	0	0	copy fasta	CPPED1	chr16	12654799	12808887
CPPED1_chr16_12654799_12808887	0/0	c0019	519	1	0	1	0	0	0	copy fasta	CPPED1	chr16	12654799	12808887
CPQ_chr8_96640242_97148501	0/0	c0001	1419	55	19	12	17	3	4	copy fasta	CPQ	chr8	96640242	97148501
CPQ_chr8_96640242_97148501	1/1	c0002	1419	50	18	7	17	2	4	copy fasta	CPQ	chr8	96640242	97148501
CPQ_chr8_96640242_97148501	0/0	c0003	1419	8	8	0	0	0	0	copy fasta	CPQ	chr8	96640242	97148501
CPQ_chr8_96640242_97148501	0/0	c0004	1419	2	2	0	0	0	0	copy fasta	CPQ	chr8	96640242	97148501
CPQ_chr8_96640242_97148501	0/0	c0005	1419	2	2	0	0	0	0	copy fasta	CPQ	chr8	96640242	97148501
CPQ_chr8_96640242_97148501	0/0	c0006	1419	2	2	0	0	0	0	copy fasta	CPQ	chr8	96640242	97148501
CPQ_chr8_96640242_97148501	0/0	c0007	1419	1	1	0	0	0	0	copy fasta	CPQ	chr8	96640242	97148501
CPQ_chr8_96640242_97148501	0/0	c0008	1419	1	1	0	0	0	0	copy fasta	CPQ	chr8	96640242	97148501
CPQ_chr8_96640242_97148501	0/0	c0009	1419	1	0	0	0	1	0	copy fasta	CPQ	chr8	96640242	97148501
CPQ_chr8_96640242_97148501	0/0	c0010	1419	1	0	1	0	0	0	copy fasta	CPQ	chr8	96640242	97148501
CPQ_chr8_96640242_97148501	0/0	c0011	1419	1	1	0	0	0	0	copy fasta	CPQ	chr8	96640242	97148501
CPQ_chr8_96640242_97148501	0/0	c0012	1419	1	1	0	0	0	0	copy fasta	CPQ	chr8	96640242	97148501
CPQ_chr8_96640242_97148501	0/0	c0013	1419	1	1	0	0	0	0	copy fasta	CPQ	chr8	96640242	97148501
CPS1_chr2_210551599_210684107	0/1	c0001	4503	115	30	18	51	6	9	copy fasta	CPS1	chr2	210551599	210684107
CPS1_chr2_210551599_210684107	1/0	c0002	4503	77	5	16	47	2	6	copy fasta	CPS1	chr2	210551599	210684107
CPS1_chr2_210551599_210684107	0/0	c0003	4503	52	19	9	18	0	6	copy fasta	CPS1	chr2	210551599	210684107
CPS1_chr2_210551599_210684107	0/0	c0004	4503	26	4	10	6	0	6	copy fasta	CPS1	chr2	210551599	210684107
CPS1_chr2_210551599_210684107	0/0	c0005	4503	12	5	1	4	0	2	copy fasta	CPS1	chr2	210551599	210684107
CPS1_chr2_210551599_210684107	0/0	c0006	4503	9	0	1	7	0	1	copy fasta	CPS1	chr2	210551599	210684107
CPS1_chr2_210551599_210684107	0/0	c0007	4503	8	5	0	0	0	3	copy fasta	CPS1	chr2	210551599	210684107
CPS1_chr2_210551599_210684107	0/0	c0008	4503	6	0	2	3	0	1	copy fasta	CPS1	chr2	210551599	210684107
CPS1_chr2_210551599_210684107	0/0	c0009	4503	4	4	0	0	0	0	copy fasta	CPS1	chr2	210551599	210684107
CPS1_chr2_210551599_210684107	0/0	c0010	4503	3	3	0	0	0	0	copy fasta	CPS1	chr2	210551599	210684107
CPS1_chr2_210551599_210684107	0/0	c0011	4503	3	3	0	0	0	0	copy fasta	CPS1	chr2	210551599	210684107
CPS1_chr2_210551599_210684107	0/0	c0012	4503	2	0	0	2	0	0	copy fasta	CPS1	chr2	210551599	210684107
CPS1_chr2_210551599_210684107	0/0	c0013	4503	2	2	0	0	0	0	copy fasta	CPS1	chr2	210551599	210684107
CPS1_chr2_210551599_210684107	0/0	c0014	4503	2	2	0	0	0	0	copy fasta	CPS1	chr2	210551599	210684107
CPS1_chr2_210551599_210684107	0/0	c0015	4503	2	0	2	0	0	0	copy fasta	CPS1	chr2	210551599	210684107
CPS1_chr2_210551599_210684107	0/0	c0016	4503	1	0	0	1	0	0	copy fasta	CPS1	chr2	210551599	210684107
CPS1_chr2_210551599_210684107	0/0	c0017	4503	1	0	0	1	0	0	copy fasta	CPS1	chr2	210551599	210684107