JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CPSF1_chr8_144388231_144414335	0/0	c0036	4332	1	0	0	0	0	1	copy fasta	CPSF1	chr8	144388231	144414335
CPSF2_chr14_92116969_92177145	1/1	c0001	2349	386	86	60	182	12	44	copy fasta	CPSF2	chr14	92116969	92177145
CPSF2_chr14_92116969_92177145	0/0	c0002	2349	1	0	0	1	0	0	copy fasta	CPSF2	chr14	92116969	92177145
CPSF2_chr14_92116969_92177145	0/0	c0003	2349	1	0	0	1	0	0	copy fasta	CPSF2	chr14	92116969	92177145
CPSF3_chr2_9418654_9478101	1/1	c0001	2055	203	63	57	40	10	31	copy fasta	CPSF3	chr2	9418654	9478101
CPSF3_chr2_9418654_9478101	0/0	c0002	2055	21	18	3	0	0	0	copy fasta	CPSF3	chr2	9418654	9478101
CPSF3_chr2_9418654_9478101	0/0	c0003	2055	2	2	0	0	0	0	copy fasta	CPSF3	chr2	9418654	9478101
CPSF3_chr2_9418654_9478101	0/0	c0004	2055	2	2	0	0	0	0	copy fasta	CPSF3	chr2	9418654	9478101
CPSF3_chr2_9418654_9478101	0/0	c0005	2055	1	1	0	0	0	0	copy fasta	CPSF3	chr2	9418654	9478101
CPSF3_chr2_9418654_9478101	0/0	c0006	2055	1	0	0	0	0	1	copy fasta	CPSF3	chr2	9418654	9478101
CPSF4L_chr17_73243449_73266880	1/1	c0001	540	392	92	71	171	12	44	copy fasta	CPSF4L	chr17	73243449	73266880
CPSF4L_chr17_73243449_73266880	0/0	c0002	540	4	0	0	4	0	0	copy fasta	CPSF4L	chr17	73243449	73266880
CPSF4L_chr17_73243449_73266880	0/0	c0003	540	1	0	0	1	0	0	copy fasta	CPSF4L	chr17	73243449	73266880
CPSF4L_chr17_73243449_73266880	0/0	c0004	540	1	0	1	0	0	0	copy fasta	CPSF4L	chr17	73243449	73266880
CPSF4_chr7_99433943_99462373	0/0	c0001	810	166	62	15	64	5	20	copy fasta	CPSF4	chr7	99433943	99462373
CPSF4_chr7_99433943_99462373	1/1	c0002	810	166	9	46	81	10	18	copy fasta	CPSF4	chr7	99433943	99462373
CPSF4_chr7_99433943_99462373	0/0	c0003	810	31	21	2	7	1	0	copy fasta	CPSF4	chr7	99433943	99462373
CPSF4_chr7_99433943_99462373	0/0	c0004	810	1	0	1	0	0	0	copy fasta	CPSF4	chr7	99433943	99462373
CPSF6_chr12_69234569_69279358	1/0	c0001	1656	234	47	44	110	10	22	copy fasta	CPSF6	chr12	69234569	69279358
CPSF6_chr12_69234569_69279358	0/1	c0002	1656	151	33	25	77	1	14	copy fasta	CPSF6	chr12	69234569	69279358
CPSF6_chr12_69234569_69279358	0/0	c0003	1656	3	0	0	3	0	0	copy fasta	CPSF6	chr12	69234569	69279358
CPSF6_chr12_69234569_69279358	0/0	c0004	1656	2	2	0	0	0	0	copy fasta	CPSF6	chr12	69234569	69279358
CPSF6_chr12_69234569_69279358	0/0	c0005	1656	1	0	1	0	0	0	copy fasta	CPSF6	chr12	69234569	69279358
CPSF6_chr12_69234569_69279358	0/0	c0006	1656	1	0	0	0	1	0	copy fasta	CPSF6	chr12	69234569	69279358
CPSF7_chr11_61397729_61434975	1/0	c0001	1389	97	71	11	5	2	7	copy fasta	CPSF7	chr11	61397729	61434975
CPSF7_chr11_61397729_61434975	0/1	c0002	1389	93	17	29	23	4	19	copy fasta	CPSF7	chr11	61397729	61434975
CPT1A_chr11_68749883_68846916	0/1	c0001	2322	169	48	38	55	9	18	copy fasta	CPT1A	chr11	68749883	68846916
CPT1A_chr11_68749883_68846916	1/0	c0002	2322	42	20	6	12	0	3	copy fasta	CPT1A	chr11	68749883	68846916
CPT1A_chr11_68749883_68846916	0/0	c0003	2322	12	3	2	2	4	1	copy fasta	CPT1A	chr11	68749883	68846916
CPT1A_chr11_68749883_68846916	0/0	c0004	2322	4	4	0	0	0	0	copy fasta	CPT1A	chr11	68749883	68846916
CPT1A_chr11_68749883_68846916	0/0	c0005	2322	3	0	2	0	1	0	copy fasta	CPT1A	chr11	68749883	68846916
CPT1A_chr11_68749883_68846916	0/0	c0006	2322	3	3	0	0	0	0	copy fasta	CPT1A	chr11	68749883	68846916
CPT1A_chr11_68749883_68846916	0/0	c0007	2322	1	0	0	1	0	0	copy fasta	CPT1A	chr11	68749883	68846916
CPT1A_chr11_68749883_68846916	0/0	c0008	2322	1	1	0	0	0	0	copy fasta	CPT1A	chr11	68749883	68846916
CPT1A_chr11_68749883_68846916	0/0	c0009	2322	1	1	0	0	0	0	copy fasta	CPT1A	chr11	68749883	68846916
CPT1B_chr22_50563861_50583427	0/1	c0001	2319	127	10	27	68	7	14	copy fasta	CPT1B	chr22	50563861	50583427
CPT1B_chr22_50563861_50583427	0/0	c0002	2319	78	37	8	27	1	5	copy fasta	CPT1B	chr22	50563861	50583427
CPT1B_chr22_50563861_50583427	0/0	c0003	2319	67	3	9	45	0	10	copy fasta	CPT1B	chr22	50563861	50583427
CPT1B_chr22_50563861_50583427	1/0	c0004	2319	65	23	17	10	3	11	copy fasta	CPT1B	chr22	50563861	50583427
CPT1B_chr22_50563861_50583427	0/0	c0005	2319	34	8	2	23	0	1	copy fasta	CPT1B	chr22	50563861	50583427
CPT1B_chr22_50563861_50583427	0/0	c0006	2319	14	5	0	2	1	6	copy fasta	CPT1B	chr22	50563861	50583427
CPT1B_chr22_50563861_50583427	0/0	c0007	2319	6	6	0	0	0	0	copy fasta	CPT1B	chr22	50563861	50583427
CPT1B_chr22_50563861_50583427	0/0	c0008	2319	4	0	0	4	0	0	copy fasta	CPT1B	chr22	50563861	50583427
CPT1B_chr22_50563861_50583427	0/0	c0009	2319	3	0	0	3	0	0	copy fasta	CPT1B	chr22	50563861	50583427
CPT1B_chr22_50563861_50583427	0/0	c0010	2319	2	2	0	0	0	0	copy fasta	CPT1B	chr22	50563861	50583427
CPT1B_chr22_50563861_50583427	0/0	c0011	2319	1	1	0	0	0	0	copy fasta	CPT1B	chr22	50563861	50583427
CPT1B_chr22_50563861_50583427	0/0	c0012	2319	1	1	0	0	0	0	copy fasta	CPT1B	chr22	50563861	50583427
CPT1B_chr22_50563861_50583427	0/0	c0013	2319	1	1	0	0	0	0	copy fasta	CPT1B	chr22	50563861	50583427
CPT1B_chr22_50563861_50583427	0/0	c0014	2319	1	0	1	0	0	0	copy fasta	CPT1B	chr22	50563861	50583427
CPT1B_chr22_50563861_50583427	0/0	c0015	2319	1	1	0	0	0	0	copy fasta	CPT1B	chr22	50563861	50583427