Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ADAMTS17_chr15_99966437_100346975	0/0	c0047	3288	1	1	0	0	0	0	copy fasta	ADAMTS17	chr15	99966437	100346975
ADAMTS17_chr15_99966437_100346975	0/0	c0048	3288	1	1	0	0	0	0	copy fasta	ADAMTS17	chr15	99966437	100346975
ADAMTS17_chr15_99966437_100346975	0/0	c0049	3288	1	1	0	0	0	0	copy fasta	ADAMTS17	chr15	99966437	100346975
ADAMTS17_chr15_99966437_100346975	0/0	c0050	3288	1	0	1	0	0	0	copy fasta	ADAMTS17	chr15	99966437	100346975
ADAMTS17_chr15_99966437_100346975	0/0	c0051	3288	1	1	0	0	0	0	copy fasta	ADAMTS17	chr15	99966437	100346975
ADAMTS17_chr15_99966437_100346975	0/0	c0052	3288	1	1	0	0	0	0	copy fasta	ADAMTS17	chr15	99966437	100346975
ADAMTS17_chr15_99966437_100346975	0/0	c0053	3288	1	1	0	0	0	0	copy fasta	ADAMTS17	chr15	99966437	100346975
ADAMTS17_chr15_99966437_100346975	0/0	c0054	3288	1	0	0	1	0	0	copy fasta	ADAMTS17	chr15	99966437	100346975
ADAMTS17_chr15_99966437_100346975	0/0	c0055	3288	1	1	0	0	0	0	copy fasta	ADAMTS17	chr15	99966437	100346975
ADAMTS17_chr15_99966437_100346975	0/0	c0056	3288	1	0	1	0	0	0	copy fasta	ADAMTS17	chr15	99966437	100346975
ADAMTS17_chr15_99966437_100346975	0/0	c0057	3288	1	0	0	1	0	0	copy fasta	ADAMTS17	chr15	99966437	100346975
ADAMTS17_chr15_99966437_100346975	0/0	c0058	3288	1	0	0	0	1	0	copy fasta	ADAMTS17	chr15	99966437	100346975
ADAMTS17_chr15_99966437_100346975	0/0	c0059	3288	1	1	0	0	0	0	copy fasta	ADAMTS17	chr15	99966437	100346975
ADAMTS17_chr15_99966437_100346975	0/0	c0060	3288	1	0	0	0	1	0	copy fasta	ADAMTS17	chr15	99966437	100346975
ADAMTS17_chr15_99966437_100346975	0/0	c0061	3288	1	0	0	1	0	0	copy fasta	ADAMTS17	chr15	99966437	100346975
ADAMTS17_chr15_99966437_100346975	0/0	c0062	3288	1	0	1	0	0	0	copy fasta	ADAMTS17	chr15	99966437	100346975
ADAMTS17_chr15_99966437_100346975	0/0	c0063	3288	1	0	0	1	0	0	copy fasta	ADAMTS17	chr15	99966437	100346975
ADAMTS17_chr15_99966437_100346975	0/0	c0064	3288	1	0	1	0	0	0	copy fasta	ADAMTS17	chr15	99966437	100346975
ADAMTS17_chr15_99966437_100346975	0/0	c0065	3288	1	1	0	0	0	0	copy fasta	ADAMTS17	chr15	99966437	100346975
ADAMTS17_chr15_99966437_100346975	0/0	c0066	3288	1	1	0	0	0	0	copy fasta	ADAMTS17	chr15	99966437	100346975
ADAMTS17_chr15_99966437_100346975	0/1	c0067	3288	1	0	0	0	0	0	copy fasta	ADAMTS17	chr15	99966437	100346975
ADAMTS17_chr15_99966437_100346975	0/0	c0068	3288	1	0	0	0	0	1	copy fasta	ADAMTS17	chr15	99966437	100346975
ADAMTS17_chr15_99966437_100346975	0/0	c0069	3288	1	0	0	1	0	0	copy fasta	ADAMTS17	chr15	99966437	100346975
ADAMTS17_chr15_99966437_100346975	0/0	c0070	3288	1	1	0	0	0	0	copy fasta	ADAMTS17	chr15	99966437	100346975
ADAMTS17_chr15_99966437_100346975	0/0	c0071	3288	1	1	0	0	0	0	copy fasta	ADAMTS17	chr15	99966437	100346975
ADAMTS17_chr15_99966437_100346975	0/0	c0072	3288	1	0	0	0	0	1	copy fasta	ADAMTS17	chr15	99966437	100346975
ADAMTS17_chr15_99966437_100346975	0/0	c0073	3288	1	0	0	0	0	1	copy fasta	ADAMTS17	chr15	99966437	100346975
ADAMTS17_chr15_99966437_100346975	0/0	c0074	3288	1	0	1	0	0	0	copy fasta	ADAMTS17	chr15	99966437	100346975
ADAMTS17_chr15_99966437_100346975	0/0	c0075	3288	1	0	0	1	0	0	copy fasta	ADAMTS17	chr15	99966437	100346975
ADAMTS17_chr15_99966437_100346975	0/0	c0076	3288	1	0	0	1	0	0	copy fasta	ADAMTS17	chr15	99966437	100346975
ADAMTS17_chr15_99966437_100346975	0/0	c0077	3288	1	0	1	0	0	0	copy fasta	ADAMTS17	chr15	99966437	100346975
ADAMTS17_chr15_99966437_100346975	0/0	c0078	3288	1	0	1	0	0	0	copy fasta	ADAMTS17	chr15	99966437	100346975
ADAMTS18_chr16_77277128_77440034	0/0	c0001	3666	51	5	9	30	0	7	copy fasta	ADAMTS18	chr16	77277128	77440034
ADAMTS18_chr16_77277128_77440034	0/0	c0002	3666	31	2	5	20	0	4	copy fasta	ADAMTS18	chr16	77277128	77440034
ADAMTS18_chr16_77277128_77440034	0/0	c0003	3666	22	19	3	0	0	0	copy fasta	ADAMTS18	chr16	77277128	77440034
ADAMTS18_chr16_77277128_77440034	0/0	c0004	3666	20	0	5	4	5	6	copy fasta	ADAMTS18	chr16	77277128	77440034
ADAMTS18_chr16_77277128_77440034	0/0	c0005	3666	17	0	3	5	2	7	copy fasta	ADAMTS18	chr16	77277128	77440034
ADAMTS18_chr16_77277128_77440034	1/0	c0006	3666	17	1	7	6	1	1	copy fasta	ADAMTS18	chr16	77277128	77440034
ADAMTS18_chr16_77277128_77440034	0/0	c0007	3666	16	8	2	4	0	2	copy fasta	ADAMTS18	chr16	77277128	77440034
ADAMTS18_chr16_77277128_77440034	0/0	c0008	3666	15	0	3	12	0	0	copy fasta	ADAMTS18	chr16	77277128	77440034
ADAMTS18_chr16_77277128_77440034	0/0	c0009	3666	15	0	0	14	0	1	copy fasta	ADAMTS18	chr16	77277128	77440034
ADAMTS18_chr16_77277128_77440034	0/0	c0010	3666	13	4	3	3	1	2	copy fasta	ADAMTS18	chr16	77277128	77440034
ADAMTS18_chr16_77277128_77440034	0/1	c0011	3666	8	5	2	0	0	0	copy fasta	ADAMTS18	chr16	77277128	77440034
ADAMTS18_chr16_77277128_77440034	0/0	c0012	3666	8	8	0	0	0	0	copy fasta	ADAMTS18	chr16	77277128	77440034
ADAMTS18_chr16_77277128_77440034	0/0	c0013	3666	7	1	0	5	0	1	copy fasta	ADAMTS18	chr16	77277128	77440034
ADAMTS18_chr16_77277128_77440034	0/0	c0014	3666	6	0	2	3	0	1	copy fasta	ADAMTS18	chr16	77277128	77440034
ADAMTS18_chr16_77277128_77440034	0/0	c0015	3666	5	0	0	2	0	3	copy fasta	ADAMTS18	chr16	77277128	77440034
ADAMTS18_chr16_77277128_77440034	0/0	c0016	3666	3	0	0	3	0	0	copy fasta	ADAMTS18	chr16	77277128	77440034
ADAMTS18_chr16_77277128_77440034	0/0	c0017	3666	3	0	2	1	0	0	copy fasta	ADAMTS18	chr16	77277128	77440034
ADAMTS18_chr16_77277128_77440034	0/0	c0018	3666	3	2	0	0	0	1	copy fasta	ADAMTS18	chr16	77277128	77440034