JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CRISPLD2_chr16_84814985_84914508	0/0	c0004	1494	38	8	6	13	3	8	copy fasta	CRISPLD2	chr16	84814985	84914508
CRISPLD2_chr16_84814985_84914508	0/0	c0005	1494	32	4	7	13	2	6	copy fasta	CRISPLD2	chr16	84814985	84914508
CRISPLD2_chr16_84814985_84914508	1/0	c0006	1494	26	10	6	5	2	2	copy fasta	CRISPLD2	chr16	84814985	84914508
CRISPLD2_chr16_84814985_84914508	0/0	c0007	1494	25	13	7	3	0	2	copy fasta	CRISPLD2	chr16	84814985	84914508
CRISPLD2_chr16_84814985_84914508	0/0	c0008	1494	18	3	2	8	1	4	copy fasta	CRISPLD2	chr16	84814985	84914508
CRISPLD2_chr16_84814985_84914508	0/0	c0009	1494	13	4	4	5	0	0	copy fasta	CRISPLD2	chr16	84814985	84914508
CRISPLD2_chr16_84814985_84914508	0/0	c0010	1494	10	0	4	1	0	5	copy fasta	CRISPLD2	chr16	84814985	84914508
CRISPLD2_chr16_84814985_84914508	0/0	c0011	1494	8	7	1	0	0	0	copy fasta	CRISPLD2	chr16	84814985	84914508
CRISPLD2_chr16_84814985_84914508	0/1	c0012	1494	5	2	2	0	0	0	copy fasta	CRISPLD2	chr16	84814985	84914508
CRISPLD2_chr16_84814985_84914508	0/0	c0013	1494	4	1	0	3	0	0	copy fasta	CRISPLD2	chr16	84814985	84914508
CRISPLD2_chr16_84814985_84914508	0/0	c0014	1494	4	4	0	0	0	0	copy fasta	CRISPLD2	chr16	84814985	84914508
CRISPLD2_chr16_84814985_84914508	0/0	c0015	1494	3	0	0	0	2	1	copy fasta	CRISPLD2	chr16	84814985	84914508
CRISPLD2_chr16_84814985_84914508	0/0	c0016	1494	2	2	0	0	0	0	copy fasta	CRISPLD2	chr16	84814985	84914508
CRISPLD2_chr16_84814985_84914508	0/0	c0017	1494	2	0	2	0	0	0	copy fasta	CRISPLD2	chr16	84814985	84914508
CRISPLD2_chr16_84814985_84914508	0/0	c0018	1494	2	2	0	0	0	0	copy fasta	CRISPLD2	chr16	84814985	84914508
CRISPLD2_chr16_84814985_84914508	0/0	c0019	1494	2	0	2	0	0	0	copy fasta	CRISPLD2	chr16	84814985	84914508
CRISPLD2_chr16_84814985_84914508	0/0	c0020	1494	2	0	0	0	0	2	copy fasta	CRISPLD2	chr16	84814985	84914508
CRISPLD2_chr16_84814985_84914508	0/0	c0021	1494	1	0	0	1	0	0	copy fasta	CRISPLD2	chr16	84814985	84914508
CRISPLD2_chr16_84814985_84914508	0/0	c0022	1494	1	0	1	0	0	0	copy fasta	CRISPLD2	chr16	84814985	84914508
CRISPLD2_chr16_84814985_84914508	0/0	c0023	1494	1	1	0	0	0	0	copy fasta	CRISPLD2	chr16	84814985	84914508
CRISPLD2_chr16_84814985_84914508	0/0	c0024	1494	1	0	0	1	0	0	copy fasta	CRISPLD2	chr16	84814985	84914508
CRISPLD2_chr16_84814985_84914508	0/0	c0025	1494	1	1	0	0	0	0	copy fasta	CRISPLD2	chr16	84814985	84914508
CRISPLD2_chr16_84814985_84914508	0/0	c0026	1494	1	1	0	0	0	0	copy fasta	CRISPLD2	chr16	84814985	84914508
CRISPLD2_chr16_84814985_84914508	0/0	c0027	1494	1	1	0	0	0	0	copy fasta	CRISPLD2	chr16	84814985	84914508
CRISPLD2_chr16_84814985_84914508	0/0	c0028	1494	1	1	0	0	0	0	copy fasta	CRISPLD2	chr16	84814985	84914508
CRISPLD2_chr16_84814985_84914508	0/0	c0029	1494	1	1	0	0	0	0	copy fasta	CRISPLD2	chr16	84814985	84914508
CRISPLD2_chr16_84814985_84914508	0/0	c0030	1494	1	0	0	1	0	0	copy fasta	CRISPLD2	chr16	84814985	84914508
CRISPLD2_chr16_84814985_84914508	0/0	c0031	1494	1	0	1	0	0	0	copy fasta	CRISPLD2	chr16	84814985	84914508
CRKL_chr22_20912407_20958747	1/1	c0001	912	367	85	64	162	16	38	copy fasta	CRKL	chr22	20912407	20958747
CRKL_chr22_20912407_20958747	0/0	c0002	912	2	2	0	0	0	0	copy fasta	CRKL	chr22	20912407	20958747
CRKL_chr22_20912407_20958747	0/0	c0003	912	1	1	0	0	0	0	copy fasta	CRKL	chr22	20912407	20958747
CRK_chr17_1415693_1461232	0/0	c0001	915	275	79	56	102	9	29	copy fasta	CRK	chr17	1415693	1461232
CRK_chr17_1415693_1461232	1/1	c0002	915	123	13	24	64	7	13	copy fasta	CRK	chr17	1415693	1461232
CRK_chr17_1415693_1461232	0/0	c0003	915	6	4	2	0	0	0	copy fasta	CRK	chr17	1415693	1461232
CRLF1_chr19_18588237_18611799	1/1	c0001	1269	235	70	49	81	7	26	copy fasta	CRLF1	chr19	18588237	18611799
CRLF1_chr19_18588237_18611799	0/0	c0002	1266	136	6	23	95	2	10	copy fasta	CRLF1	chr19	18588237	18611799
CRLF1_chr19_18588237_18611799	0/0	c0003	1266	16	12	1	3	0	0	copy fasta	CRLF1	chr19	18588237	18611799
CRLF1_chr19_18588237_18611799	0/0	c0004	1269	5	0	0	5	0	0	copy fasta	CRLF1	chr19	18588237	18611799
CRLF1_chr19_18588237_18611799	0/0	c0005	1269	4	1	3	0	0	0	copy fasta	CRLF1	chr19	18588237	18611799
CRLF1_chr19_18588237_18611799	0/0	c0006	1269	3	1	2	0	0	0	copy fasta	CRLF1	chr19	18588237	18611799
CRLF1_chr19_18588237_18611799	0/0	c0007	1266	2	0	0	2	0	0	copy fasta	CRLF1	chr19	18588237	18611799
CRLF1_chr19_18588237_18611799	0/0	c0008	1269	2	0	2	0	0	0	copy fasta	CRLF1	chr19	18588237	18611799
CRLF1_chr19_18588237_18611799	0/0	c0009	1266	1	0	0	1	0	0	copy fasta	CRLF1	chr19	18588237	18611799
CRLF1_chr19_18588237_18611799	0/0	c0010	1266	1	0	0	1	0	0	copy fasta	CRLF1	chr19	18588237	18611799
CRLF1_chr19_18588237_18611799	0/0	c0011	1269	1	0	0	0	1	0	copy fasta	CRLF1	chr19	18588237	18611799
CRLF1_chr19_18588237_18611799	0/0	c0012	1269	1	0	0	1	0	0	copy fasta	CRLF1	chr19	18588237	18611799
CRLF1_chr19_18588237_18611799	0/0	c0013	1269	1	0	0	1	0	0	copy fasta	CRLF1	chr19	18588237	18611799
CRLF2_chrX_1185490_1217649	0/0	c0001	1116	26	3	5	14	0	4	copy fasta	CRLF2	chrX	1185490	1217649
CRLF2_chrX_1185490_1217649	0/0	c0002	1116	20	7	1	8	1	3	copy fasta	CRLF2	chrX	1185490	1217649
CRLF2_chrX_1185490_1217649	0/0	c0003	1116	17	8	1	6	0	2	copy fasta	CRLF2	chrX	1185490	1217649