Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ADAMTS19_chr5_129455298_129743683	0/0	c0005	3642	6	1	4	0	0	1	copy fasta	ADAMTS19	chr5	129455298	129743683
ADAMTS19_chr5_129455298_129743683	0/0	c0006	3642	6	0	0	2	0	4	copy fasta	ADAMTS19	chr5	129455298	129743683
ADAMTS19_chr5_129455298_129743683	0/0	c0007	3642	3	3	0	0	0	0	copy fasta	ADAMTS19	chr5	129455298	129743683
ADAMTS19_chr5_129455298_129743683	0/0	c0008	3642	3	3	0	0	0	0	copy fasta	ADAMTS19	chr5	129455298	129743683
ADAMTS19_chr5_129455298_129743683	0/0	c0009	3642	2	1	1	0	0	0	copy fasta	ADAMTS19	chr5	129455298	129743683
ADAMTS19_chr5_129455298_129743683	0/0	c0010	3642	1	0	0	0	0	1	copy fasta	ADAMTS19	chr5	129455298	129743683
ADAMTS19_chr5_129455298_129743683	0/0	c0011	3648	1	1	0	0	0	0	copy fasta	ADAMTS19	chr5	129455298	129743683
ADAMTS19_chr5_129455298_129743683	0/0	c0012	3648	1	1	0	0	0	0	copy fasta	ADAMTS19	chr5	129455298	129743683
ADAMTS19_chr5_129455298_129743683	0/0	c0013	3630	1	1	0	0	0	0	copy fasta	ADAMTS19	chr5	129455298	129743683
ADAMTS19_chr5_129455298_129743683	1/0	c0014	3642	1	0	0	0	0	0	copy fasta	ADAMTS19	chr5	129455298	129743683
ADAMTS19_chr5_129455298_129743683	0/0	c0015	3642	1	1	0	0	0	0	copy fasta	ADAMTS19	chr5	129455298	129743683
ADAMTS19_chr5_129455298_129743683	0/0	c0016	3642	1	1	0	0	0	0	copy fasta	ADAMTS19	chr5	129455298	129743683
ADAMTS19_chr5_129455298_129743683	0/0	c0017	3642	1	1	0	0	0	0	copy fasta	ADAMTS19	chr5	129455298	129743683
ADAMTS19_chr5_129455298_129743683	0/0	c0018	3642	1	0	0	1	0	0	copy fasta	ADAMTS19	chr5	129455298	129743683
ADAMTS19_chr5_129455298_129743683	0/0	c0019	3642	1	1	0	0	0	0	copy fasta	ADAMTS19	chr5	129455298	129743683
ADAMTS19_chr5_129455298_129743683	0/0	c0020	3642	1	0	1	0	0	0	copy fasta	ADAMTS19	chr5	129455298	129743683
ADAMTS19_chr5_129455298_129743683	0/0	c0021	3642	1	0	1	0	0	0	copy fasta	ADAMTS19	chr5	129455298	129743683
ADAMTS19_chr5_129455298_129743683	0/0	c0022	3648	1	0	0	0	0	1	copy fasta	ADAMTS19	chr5	129455298	129743683
ADAMTS19_chr5_129455298_129743683	0/0	c0023	3642	1	1	0	0	0	0	copy fasta	ADAMTS19	chr5	129455298	129743683
ADAMTS19_chr5_129455298_129743683	0/0	c0024	3642	1	1	0	0	0	0	copy fasta	ADAMTS19	chr5	129455298	129743683
ADAMTS1_chr21_26830755_26850409	0/0	c0001	2904	166	59	32	49	5	21	copy fasta	ADAMTS1	chr21	26830755	26850409
ADAMTS1_chr21_26830755_26850409	1/0	c0002	2904	145	10	27	96	5	6	copy fasta	ADAMTS1	chr21	26830755	26850409
ADAMTS1_chr21_26830755_26850409	0/1	c0003	2904	70	1	11	45	3	9	copy fasta	ADAMTS1	chr21	26830755	26850409
ADAMTS1_chr21_26830755_26850409	0/0	c0004	2904	36	0	7	23	0	6	copy fasta	ADAMTS1	chr21	26830755	26850409
ADAMTS1_chr21_26830755_26850409	0/0	c0005	2904	28	19	2	2	2	3	copy fasta	ADAMTS1	chr21	26830755	26850409
ADAMTS1_chr21_26830755_26850409	0/0	c0006	2904	9	0	1	5	0	3	copy fasta	ADAMTS1	chr21	26830755	26850409
ADAMTS1_chr21_26830755_26850409	0/0	c0007	2904	3	3	0	0	0	0	copy fasta	ADAMTS1	chr21	26830755	26850409
ADAMTS1_chr21_26830755_26850409	0/0	c0008	2904	2	0	0	2	0	0	copy fasta	ADAMTS1	chr21	26830755	26850409
ADAMTS1_chr21_26830755_26850409	0/0	c0009	2904	2	0	0	0	2	0	copy fasta	ADAMTS1	chr21	26830755	26850409
ADAMTS1_chr21_26830755_26850409	0/0	c0010	2904	2	0	0	2	0	0	copy fasta	ADAMTS1	chr21	26830755	26850409
ADAMTS1_chr21_26830755_26850409	0/0	c0011	2904	2	0	1	0	1	0	copy fasta	ADAMTS1	chr21	26830755	26850409
ADAMTS1_chr21_26830755_26850409	0/0	c0012	2904	1	0	0	1	0	0	copy fasta	ADAMTS1	chr21	26830755	26850409
ADAMTS1_chr21_26830755_26850409	0/0	c0013	2904	1	0	0	1	0	0	copy fasta	ADAMTS1	chr21	26830755	26850409
ADAMTS1_chr21_26830755_26850409	0/0	c0014	2904	1	0	0	0	0	1	copy fasta	ADAMTS1	chr21	26830755	26850409
ADAMTS1_chr21_26830755_26850409	0/0	c0015	2904	1	0	0	1	0	0	copy fasta	ADAMTS1	chr21	26830755	26850409
ADAMTS1_chr21_26830755_26850409	0/0	c0016	2904	1	0	0	1	0	0	copy fasta	ADAMTS1	chr21	26830755	26850409
ADAMTS1_chr21_26830755_26850409	0/0	c0017	2904	1	0	0	0	0	1	copy fasta	ADAMTS1	chr21	26830755	26850409
ADAMTS1_chr21_26830755_26850409	0/0	c0018	2904	1	0	1	0	0	0	copy fasta	ADAMTS1	chr21	26830755	26850409
ADAMTS1_chr21_26830755_26850409	0/0	c0019	2904	1	1	0	0	0	0	copy fasta	ADAMTS1	chr21	26830755	26850409
ADAMTS1_chr21_26830755_26850409	0/0	c0020	2904	1	0	0	1	0	0	copy fasta	ADAMTS1	chr21	26830755	26850409
ADAMTS1_chr21_26830755_26850409	0/0	c0021	2904	1	0	0	1	0	0	copy fasta	ADAMTS1	chr21	26830755	26850409
ADAMTS1_chr21_26830755_26850409	0/0	c0022	2904	1	0	0	1	0	0	copy fasta	ADAMTS1	chr21	26830755	26850409
ADAMTS1_chr21_26830755_26850409	0/0	c0023	2904	1	0	1	0	0	0	copy fasta	ADAMTS1	chr21	26830755	26850409
ADAMTS1_chr21_26830755_26850409	0/0	c0024	2904	1	1	0	0	0	0	copy fasta	ADAMTS1	chr21	26830755	26850409
ADAMTS1_chr21_26830755_26850409	0/0	c0025	2904	1	0	1	0	0	0	copy fasta	ADAMTS1	chr21	26830755	26850409
ADAMTS1_chr21_26830755_26850409	0/0	c0026	2904	1	0	0	1	0	0	copy fasta	ADAMTS1	chr21	26830755	26850409
ADAMTS20_chr12_43348866_43557203	0/1	c0001	5733	119	17	14	71	5	11	copy fasta	ADAMTS20	chr12	43348866	43557203
ADAMTS20_chr12_43348866_43557203	1/0	c0002	5733	80	23	24	20	2	10	copy fasta	ADAMTS20	chr12	43348866	43557203
ADAMTS20_chr12_43348866_43557203	0/0	c0003	5733	37	22	7	0	3	5	copy fasta	ADAMTS20	chr12	43348866	43557203
ADAMTS20_chr12_43348866_43557203	0/0	c0004	5733	19	2	0	17	0	0	copy fasta	ADAMTS20	chr12	43348866	43557203