JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CRTAC1_chr10_97860000_98035621	0/0	c0010	1986	1	1	0	0	0	0	copy fasta	CRTAC1	chr10	97860000	98035621
CRTAC1_chr10_97860000_98035621	0/0	c0011	1986	1	0	1	0	0	0	copy fasta	CRTAC1	chr10	97860000	98035621
CRTAC1_chr10_97860000_98035621	0/0	c0012	1986	1	1	0	0	0	0	copy fasta	CRTAC1	chr10	97860000	98035621
CRTAC1_chr10_97860000_98035621	0/0	c0013	1986	1	1	0	0	0	0	copy fasta	CRTAC1	chr10	97860000	98035621
CRTAC1_chr10_97860000_98035621	0/0	c0014	1986	1	0	1	0	0	0	copy fasta	CRTAC1	chr10	97860000	98035621
CRTAC1_chr10_97860000_98035621	0/0	c0015	1986	1	1	0	0	0	0	copy fasta	CRTAC1	chr10	97860000	98035621
CRTAC1_chr10_97860000_98035621	0/0	c0016	1986	1	0	0	0	0	1	copy fasta	CRTAC1	chr10	97860000	98035621
CRTAC1_chr10_97860000_98035621	0/0	c0017	1986	1	1	0	0	0	0	copy fasta	CRTAC1	chr10	97860000	98035621
CRTAM_chr11_122833500_122877643	0/1	c0001	1182	192	19	48	85	11	28	copy fasta	CRTAM	chr11	122833500	122877643
CRTAM_chr11_122833500_122877643	1/0	c0002	1182	72	36	11	17	2	5	copy fasta	CRTAM	chr11	122833500	122877643
CRTAM_chr11_122833500_122877643	0/0	c0003	1182	63	0	3	54	0	6	copy fasta	CRTAM	chr11	122833500	122877643
CRTAM_chr11_122833500_122877643	0/0	c0004	1182	54	6	6	31	3	8	copy fasta	CRTAM	chr11	122833500	122877643
CRTAM_chr11_122833500_122877643	0/0	c0005	1182	6	5	1	0	0	0	copy fasta	CRTAM	chr11	122833500	122877643
CRTAM_chr11_122833500_122877643	0/0	c0006	1182	6	6	0	0	0	0	copy fasta	CRTAM	chr11	122833500	122877643
CRTAM_chr11_122833500_122877643	0/0	c0007	1182	6	6	0	0	0	0	copy fasta	CRTAM	chr11	122833500	122877643
CRTAM_chr11_122833500_122877643	0/0	c0008	1182	5	4	1	0	0	0	copy fasta	CRTAM	chr11	122833500	122877643
CRTAM_chr11_122833500_122877643	0/0	c0009	1182	5	0	0	4	0	1	copy fasta	CRTAM	chr11	122833500	122877643
CRTAM_chr11_122833500_122877643	0/0	c0010	1182	3	3	0	0	0	0	copy fasta	CRTAM	chr11	122833500	122877643
CRTAM_chr11_122833500_122877643	0/0	c0011	1182	3	2	1	0	0	0	copy fasta	CRTAM	chr11	122833500	122877643
CRTAM_chr11_122833500_122877643	0/0	c0012	1182	3	3	0	0	0	0	copy fasta	CRTAM	chr11	122833500	122877643
CRTAM_chr11_122833500_122877643	0/0	c0013	1182	3	3	0	0	0	0	copy fasta	CRTAM	chr11	122833500	122877643
CRTAM_chr11_122833500_122877643	0/0	c0014	1182	1	0	1	0	0	0	copy fasta	CRTAM	chr11	122833500	122877643
CRTAM_chr11_122833500_122877643	0/0	c0015	1182	1	1	0	0	0	0	copy fasta	CRTAM	chr11	122833500	122877643
CRTAM_chr11_122833500_122877643	0/0	c0016	1182	1	1	0	0	0	0	copy fasta	CRTAM	chr11	122833500	122877643
CRTAM_chr11_122833500_122877643	0/0	c0017	1182	1	0	0	1	0	0	copy fasta	CRTAM	chr11	122833500	122877643
CRTAM_chr11_122833500_122877643	0/0	c0018	1182	1	1	0	0	0	0	copy fasta	CRTAM	chr11	122833500	122877643
CRTAM_chr11_122833500_122877643	0/0	c0019	1182	1	1	0	0	0	0	copy fasta	CRTAM	chr11	122833500	122877643
CRTAM_chr11_122833500_122877643	0/0	c0020	1182	1	1	0	0	0	0	copy fasta	CRTAM	chr11	122833500	122877643
CRTAP_chr3_33109014_33152773	1/1	c0001	1206	155	23	46	57	7	20	copy fasta	CRTAP	chr3	33109014	33152773
CRTAP_chr3_33109014_33152773	0/0	c0002	1206	107	12	5	81	1	8	copy fasta	CRTAP	chr3	33109014	33152773
CRTAP_chr3_33109014_33152773	0/0	c0003	1206	84	17	21	26	4	16	copy fasta	CRTAP	chr3	33109014	33152773
CRTAP_chr3_33109014_33152773	0/0	c0004	1206	24	12	2	9	0	1	copy fasta	CRTAP	chr3	33109014	33152773
CRTAP_chr3_33109014_33152773	0/0	c0005	1206	11	11	0	0	0	0	copy fasta	CRTAP	chr3	33109014	33152773
CRTAP_chr3_33109014_33152773	0/0	c0006	1206	11	6	1	4	0	0	copy fasta	CRTAP	chr3	33109014	33152773
CRTAP_chr3_33109014_33152773	0/0	c0007	1206	3	2	1	0	0	0	copy fasta	CRTAP	chr3	33109014	33152773
CRTAP_chr3_33109014_33152773	0/0	c0008	1206	3	0	0	0	0	3	copy fasta	CRTAP	chr3	33109014	33152773
CRTAP_chr3_33109014_33152773	0/0	c0009	1206	2	0	0	0	2	0	copy fasta	CRTAP	chr3	33109014	33152773
CRTAP_chr3_33109014_33152773	0/0	c0010	1206	2	2	0	0	0	0	copy fasta	CRTAP	chr3	33109014	33152773
CRTAP_chr3_33109014_33152773	0/0	c0011	1206	1	0	1	0	0	0	copy fasta	CRTAP	chr3	33109014	33152773
CRTAP_chr3_33109014_33152773	0/0	c0012	1206	1	1	0	0	0	0	copy fasta	CRTAP	chr3	33109014	33152773
CRTAP_chr3_33109014_33152773	0/0	c0013	1206	1	0	1	0	0	0	copy fasta	CRTAP	chr3	33109014	33152773
CRTAP_chr3_33109014_33152773	0/0	c0014	1206	1	1	0	0	0	0	copy fasta	CRTAP	chr3	33109014	33152773
CRTAP_chr3_33109014_33152773	0/0	c0015	1206	1	0	0	1	0	0	copy fasta	CRTAP	chr3	33109014	33152773
CRTAP_chr3_33109014_33152773	0/0	c0016	1206	1	1	0	0	0	0	copy fasta	CRTAP	chr3	33109014	33152773
CRTC1_chr19_18678680_18787333	1/1	c0001	1905	206	77	46	48	6	27	copy fasta	CRTC1	chr19	18678680	18787333
CRTC1_chr19_18678680_18787333	0/0	c0002	1905	36	2	3	21	5	5	copy fasta	CRTC1	chr19	18678680	18787333
CRTC1_chr19_18678680_18787333	0/0	c0003	1905	17	0	12	3	0	2	copy fasta	CRTC1	chr19	18678680	18787333
CRTC1_chr19_18678680_18787333	0/0	c0004	1905	7	0	4	1	1	1	copy fasta	CRTC1	chr19	18678680	18787333
CRTC1_chr19_18678680_18787333	0/0	c0005	1905	3	0	0	0	0	3	copy fasta	CRTC1	chr19	18678680	18787333
CRTC1_chr19_18678680_18787333	0/0	c0006	1905	1	0	0	1	0	0	copy fasta	CRTC1	chr19	18678680	18787333