JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CSDE1_chr1_114711916_114762984	0/0	c0007	2397	1	1	0	0	0	0	copy fasta	CSDE1	chr1	114711916	114762984
CSE1L_chr20_49041312_49101949	1/0	c0001	2916	301	62	53	152	6	27	copy fasta	CSE1L	chr20	49041312	49101949
CSE1L_chr20_49041312_49101949	0/1	c0002	2916	64	23	14	18	2	6	copy fasta	CSE1L	chr20	49041312	49101949
CSE1L_chr20_49041312_49101949	0/0	c0003	2916	14	0	2	6	0	6	copy fasta	CSE1L	chr20	49041312	49101949
CSE1L_chr20_49041312_49101949	0/0	c0004	2890	1	0	0	1	0	0	copy fasta	CSE1L	chr20	49041312	49101949
CSE1L_chr20_49041312_49101949	0/0	c0005	2916	1	0	0	0	0	1	copy fasta	CSE1L	chr20	49041312	49101949
CSE1L_chr20_49041312_49101949	0/0	c0006	2916	1	0	0	1	0	0	copy fasta	CSE1L	chr20	49041312	49101949
CSE1L_chr20_49041312_49101949	0/0	c0007	2916	1	0	0	0	0	1	copy fasta	CSE1L	chr20	49041312	49101949
CSE1L_chr20_49041312_49101949	0/0	c0008	2916	1	1	0	0	0	0	copy fasta	CSE1L	chr20	49041312	49101949
CSE1L_chr20_49041312_49101949	0/0	c0009	2916	1	0	1	0	0	0	copy fasta	CSE1L	chr20	49041312	49101949
CSE1L_chr20_49041312_49101949	0/0	c0010	2916	1	0	0	0	0	1	copy fasta	CSE1L	chr20	49041312	49101949
CSF1R_chr5_150048295_150091554	1/0	c0001	2919	136	38	23	52	8	14	copy fasta	CSF1R	chr5	150048295	150091554
CSF1R_chr5_150048295_150091554	0/0	c0002	2919	61	15	13	19	5	9	copy fasta	CSF1R	chr5	150048295	150091554
CSF1R_chr5_150048295_150091554	0/0	c0003	2919	58	5	9	38	1	5	copy fasta	CSF1R	chr5	150048295	150091554
CSF1R_chr5_150048295_150091554	0/0	c0004	2919	48	4	10	31	0	3	copy fasta	CSF1R	chr5	150048295	150091554
CSF1R_chr5_150048295_150091554	0/0	c0005	2919	35	5	1	22	0	7	copy fasta	CSF1R	chr5	150048295	150091554
CSF1R_chr5_150048295_150091554	0/0	c0006	2919	11	5	2	1	1	2	copy fasta	CSF1R	chr5	150048295	150091554
CSF1R_chr5_150048295_150091554	0/0	c0007	2919	9	6	3	0	0	0	copy fasta	CSF1R	chr5	150048295	150091554
CSF1R_chr5_150048295_150091554	0/0	c0008	2919	8	5	1	1	0	1	copy fasta	CSF1R	chr5	150048295	150091554
CSF1R_chr5_150048295_150091554	0/0	c0009	2919	8	0	0	8	0	0	copy fasta	CSF1R	chr5	150048295	150091554
CSF1R_chr5_150048295_150091554	0/1	c0010	2919	4	0	2	0	1	0	copy fasta	CSF1R	chr5	150048295	150091554
CSF1R_chr5_150048295_150091554	0/0	c0011	2919	3	2	1	0	0	0	copy fasta	CSF1R	chr5	150048295	150091554
CSF1R_chr5_150048295_150091554	0/0	c0012	2919	3	0	3	0	0	0	copy fasta	CSF1R	chr5	150048295	150091554
CSF1R_chr5_150048295_150091554	0/0	c0013	2919	3	0	0	3	0	0	copy fasta	CSF1R	chr5	150048295	150091554
CSF1R_chr5_150048295_150091554	0/0	c0014	2919	2	2	0	0	0	0	copy fasta	CSF1R	chr5	150048295	150091554
CSF1R_chr5_150048295_150091554	0/0	c0015	2919	2	2	0	0	0	0	copy fasta	CSF1R	chr5	150048295	150091554
CSF1R_chr5_150048295_150091554	0/0	c0016	2919	2	2	0	0	0	0	copy fasta	CSF1R	chr5	150048295	150091554
CSF1R_chr5_150048295_150091554	0/0	c0017	2919	2	0	0	2	0	0	copy fasta	CSF1R	chr5	150048295	150091554
CSF1R_chr5_150048295_150091554	0/0	c0018	2919	1	1	0	0	0	0	copy fasta	CSF1R	chr5	150048295	150091554
CSF1R_chr5_150048295_150091554	0/0	c0019	2919	1	0	1	0	0	0	copy fasta	CSF1R	chr5	150048295	150091554
CSF1R_chr5_150048295_150091554	0/0	c0020	2919	1	0	0	0	0	1	copy fasta	CSF1R	chr5	150048295	150091554
CSF1R_chr5_150048295_150091554	0/0	c0021	2919	1	0	0	1	0	0	copy fasta	CSF1R	chr5	150048295	150091554
CSF1R_chr5_150048295_150091554	0/0	c0022	2919	1	0	1	0	0	0	copy fasta	CSF1R	chr5	150048295	150091554
CSF1R_chr5_150048295_150091554	0/0	c0023	2919	1	1	0	0	0	0	copy fasta	CSF1R	chr5	150048295	150091554
CSF1R_chr5_150048295_150091554	0/0	c0024	2919	1	0	0	1	0	0	copy fasta	CSF1R	chr5	150048295	150091554
CSF1R_chr5_150048295_150091554	0/0	c0025	2919	1	1	0	0	0	0	copy fasta	CSF1R	chr5	150048295	150091554
CSF1R_chr5_150048295_150091554	0/0	c0026	2919	1	1	0	0	0	0	copy fasta	CSF1R	chr5	150048295	150091554
CSF1R_chr5_150048295_150091554	0/0	c0027	2919	1	1	0	0	0	0	copy fasta	CSF1R	chr5	150048295	150091554
CSF1R_chr5_150048295_150091554	0/0	c0028	2919	1	0	0	1	0	0	copy fasta	CSF1R	chr5	150048295	150091554
CSF1_chr1_109905849_109935992	0/1	c0001	1665	145	8	39	66	3	28	copy fasta	CSF1	chr1	109905849	109935992
CSF1_chr1_109905849_109935992	0/0	c0002	1665	98	18	5	71	2	2	copy fasta	CSF1	chr1	109905849	109935992
CSF1_chr1_109905849_109935992	0/0	c0003	1665	53	12	5	31	0	5	copy fasta	CSF1	chr1	109905849	109935992
CSF1_chr1_109905849_109935992	0/0	c0004	1665	39	26	1	11	0	1	copy fasta	CSF1	chr1	109905849	109935992
CSF1_chr1_109905849_109935992	0/0	c0005	1665	32	4	18	0	3	7	copy fasta	CSF1	chr1	109905849	109935992
CSF1_chr1_109905849_109935992	0/0	c0006	1665	15	0	0	12	2	1	copy fasta	CSF1	chr1	109905849	109935992
CSF1_chr1_109905849_109935992	0/0	c0007	1666	11	4	0	7	0	0	copy fasta	CSF1	chr1	109905849	109935992
CSF1_chr1_109905849_109935992	0/0	c0008	1666	8	1	1	6	0	0	copy fasta	CSF1	chr1	109905849	109935992
CSF1_chr1_109905849_109935992	0/0	c0009	1665	7	7	0	0	0	0	copy fasta	CSF1	chr1	109905849	109935992
CSF1_chr1_109905849_109935992	0/0	c0010	1666	4	2	0	2	0	0	copy fasta	CSF1	chr1	109905849	109935992
CSF1_chr1_109905849_109935992	0/0	c0011	1665	4	3	1	0	0	0	copy fasta	CSF1	chr1	109905849	109935992