JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CTDSP1_chr2_218394868_218410941	1/0	c0002	786	151	77	13	46	2	12	copy fasta	CTDSP1	chr2	218394868	218410941
CTDSP1_chr2_218394868_218410941	0/0	c0003	786	61	8	14	22	6	11	copy fasta	CTDSP1	chr2	218394868	218410941
CTDSP1_chr2_218394868_218410941	0/0	c0004	786	13	10	2	0	0	1	copy fasta	CTDSP1	chr2	218394868	218410941
CTDSP1_chr2_218394868_218410941	0/0	c0005	786	1	0	0	1	0	0	copy fasta	CTDSP1	chr2	218394868	218410941
CTDSP1_chr2_218394868_218410941	0/0	c0006	786	1	1	0	0	0	0	copy fasta	CTDSP1	chr2	218394868	218410941
CTDSP1_chr2_218394868_218410941	0/0	c0007	786	1	1	0	0	0	0	copy fasta	CTDSP1	chr2	218394868	218410941
CTDSP1_chr2_218394868_218410941	0/0	c0008	786	1	0	0	0	0	1	copy fasta	CTDSP1	chr2	218394868	218410941
CTDSP1_chr2_218394868_218410941	0/0	c0009	786	1	1	0	0	0	0	copy fasta	CTDSP1	chr2	218394868	218410941
CTDSP1_chr2_218394868_218410941	0/0	c0010	786	1	0	1	0	0	0	copy fasta	CTDSP1	chr2	218394868	218410941
CTDSP2_chr12_57814927_57851729	1/1	c0001	816	343	85	72	132	11	41	copy fasta	CTDSP2	chr12	57814927	57851729
CTDSP2_chr12_57814927_57851729	0/0	c0002	816	1	1	0	0	0	0	copy fasta	CTDSP2	chr12	57814927	57851729
CTDSP2_chr12_57814927_57851729	0/0	c0003	816	1	0	0	0	0	1	copy fasta	CTDSP2	chr12	57814927	57851729
CTDSP2_chr12_57814927_57851729	0/0	c0004	816	1	0	0	0	1	0	copy fasta	CTDSP2	chr12	57814927	57851729
CTDSPL2_chr15_44422629_44534038	1/1	c0001	1401	202	61	38	77	2	22	copy fasta	CTDSPL2	chr15	44422629	44534038
CTDSPL2_chr15_44422629_44534038	0/0	c0002	1401	18	6	0	12	0	0	copy fasta	CTDSPL2	chr15	44422629	44534038
CTDSPL2_chr15_44422629_44534038	0/0	c0003	1401	9	9	0	0	0	0	copy fasta	CTDSPL2	chr15	44422629	44534038
CTDSPL2_chr15_44422629_44534038	0/0	c0004	1401	2	2	0	0	0	0	copy fasta	CTDSPL2	chr15	44422629	44534038
CTDSPL2_chr15_44422629_44534038	0/0	c0005	1401	1	1	0	0	0	0	copy fasta	CTDSPL2	chr15	44422629	44534038
CTDSPL2_chr15_44422629_44534038	0/0	c0006	1401	1	1	0	0	0	0	copy fasta	CTDSPL2	chr15	44422629	44534038
CTDSPL2_chr15_44422629_44534038	0/0	c0007	1401	1	0	0	1	0	0	copy fasta	CTDSPL2	chr15	44422629	44534038
CTDSPL_chr3_37856880_37989469	1/1	c0001	831	160	70	33	29	8	18	copy fasta	CTDSPL	chr3	37856880	37989469
CTDSPL_chr3_37856880_37989469	0/0	c0002	831	4	4	0	0	0	0	copy fasta	CTDSPL	chr3	37856880	37989469
CTDSPL_chr3_37856880_37989469	0/0	c0003	831	1	0	0	1	0	0	copy fasta	CTDSPL	chr3	37856880	37989469
CTDSPL_chr3_37856880_37989469	0/0	c0004	831	1	0	1	0	0	0	copy fasta	CTDSPL	chr3	37856880	37989469
CTF1_chr16_30891614_30908547	1/1	c0001	606	298	83	70	94	16	33	copy fasta	CTF1	chr16	30891614	30908547
CTF1_chr16_30891614_30908547	0/0	c0002	606	9	9	0	0	0	0	copy fasta	CTF1	chr16	30891614	30908547
CTF1_chr16_30891614_30908547	0/0	c0003	606	1	0	0	0	0	1	copy fasta	CTF1	chr16	30891614	30908547
CTHRC1_chr8_103366538_103387989	0/0	c0001	732	280	73	46	118	11	32	copy fasta	CTHRC1	chr8	103366538	103387989
CTHRC1_chr8_103366538_103387989	1/1	c0002	732	124	16	24	68	5	9	copy fasta	CTHRC1	chr8	103366538	103387989
CTHRC1_chr8_103366538_103387989	0/0	c0003	732	1	1	0	0	0	0	copy fasta	CTHRC1	chr8	103366538	103387989
CTHRC1_chr8_103366538_103387989	0/0	c0004	589	1	0	0	0	0	1	copy fasta	CTHRC1	chr8	103366538	103387989
CTHRC1_chr8_103366538_103387989	0/0	c0005	732	1	1	0	0	0	0	copy fasta	CTHRC1	chr8	103366538	103387989
CTHRC1_chr8_103366538_103387989	0/0	c0006	732	1	1	0	0	0	0	copy fasta	CTHRC1	chr8	103366538	103387989
CTH_chr1_70406268_70444851	1/0	c0001	1218	328	82	46	158	14	27	copy fasta	CTH	chr1	70406268	70444851
CTH_chr1_70406268_70444851	0/1	c0002	1218	89	7	28	43	4	6	copy fasta	CTH	chr1	70406268	70444851
CTH_chr1_70406268_70444851	0/0	c0003	1218	3	3	0	0	0	0	copy fasta	CTH	chr1	70406268	70444851
CTH_chr1_70406268_70444851	0/0	c0004	1218	1	0	0	0	0	1	copy fasta	CTH	chr1	70406268	70444851
CTH_chr1_70406268_70444851	0/0	c0005	1218	1	0	0	1	0	0	copy fasta	CTH	chr1	70406268	70444851
CTH_chr1_70406268_70444851	0/0	c0006	1218	1	1	0	0	0	0	copy fasta	CTH	chr1	70406268	70444851
CTH_chr1_70406268_70444851	0/0	c0007	1218	1	1	0	0	0	0	copy fasta	CTH	chr1	70406268	70444851
CTIF_chr18_48534031_48868217	0/1	c0001	1797	110	71	14	10	0	14	copy fasta	CTIF	chr18	48534031	48868217
CTIF_chr18_48534031_48868217	0/0	c0002	1797	10	4	3	2	0	1	copy fasta	CTIF	chr18	48534031	48868217
CTIF_chr18_48534031_48868217	1/0	c0003	1797	8	0	2	4	0	1	copy fasta	CTIF	chr18	48534031	48868217
CTIF_chr18_48534031_48868217	0/0	c0004	1797	6	2	0	3	0	1	copy fasta	CTIF	chr18	48534031	48868217
CTIF_chr18_48534031_48868217	0/0	c0005	1797	1	0	1	0	0	0	copy fasta	CTIF	chr18	48534031	48868217
CTIF_chr18_48534031_48868217	0/0	c0006	1797	1	0	1	0	0	0	copy fasta	CTIF	chr18	48534031	48868217
CTIF_chr18_48534031_48868217	0/0	c0007	1797	1	1	0	0	0	0	copy fasta	CTIF	chr18	48534031	48868217
CTIF_chr18_48534031_48868217	0/0	c0008	1797	1	0	1	0	0	0	copy fasta	CTIF	chr18	48534031	48868217
CTIF_chr18_48534031_48868217	0/0	c0009	1797	1	1	0	0	0	0	copy fasta	CTIF	chr18	48534031	48868217
CTIF_chr18_48534031_48868217	0/0	c0010	1797	1	0	0	1	0	0	copy fasta	CTIF	chr18	48534031	48868217