JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CTIF_chr18_48534031_48868217	0/0	c0011	1797	1	1	0	0	0	0	copy fasta	CTIF	chr18	48534031	48868217
CTIF_chr18_48534031_48868217	0/0	c0012	1797	1	0	1	0	0	0	copy fasta	CTIF	chr18	48534031	48868217
CTIF_chr18_48534031_48868217	0/0	c0013	1797	1	0	1	0	0	0	copy fasta	CTIF	chr18	48534031	48868217
CTIF_chr18_48534031_48868217	0/0	c0014	1797	1	0	0	0	0	1	copy fasta	CTIF	chr18	48534031	48868217
CTLA4_chr2_203862771_203878965	1/0	c0001	672	224	55	34	96	12	26	copy fasta	CTLA4	chr2	203862771	203878965
CTLA4_chr2_203862771_203878965	0/1	c0002	672	192	31	34	106	4	16	copy fasta	CTLA4	chr2	203862771	203878965
CTLA4_chr2_203862771_203878965	0/0	c0003	672	4	4	0	0	0	0	copy fasta	CTLA4	chr2	203862771	203878965
CTNNA1_chr5_138748425_138940034	1/0	c0001	2721	106	40	21	28	4	12	copy fasta	CTNNA1	chr5	138748425	138940034
CTNNA1_chr5_138748425_138940034	0/1	c0002	2721	51	19	18	1	3	9	copy fasta	CTNNA1	chr5	138748425	138940034
CTNNA1_chr5_138748425_138940034	0/0	c0003	2721	6	1	2	0	1	2	copy fasta	CTNNA1	chr5	138748425	138940034
CTNNA1_chr5_138748425_138940034	0/0	c0004	2721	3	3	0	0	0	0	copy fasta	CTNNA1	chr5	138748425	138940034
CTNNA1_chr5_138748425_138940034	0/0	c0005	2721	3	0	1	0	1	1	copy fasta	CTNNA1	chr5	138748425	138940034
CTNNA1_chr5_138748425_138940034	0/0	c0006	2721	2	0	0	2	0	0	copy fasta	CTNNA1	chr5	138748425	138940034
CTNNA1_chr5_138748425_138940034	0/0	c0007	2721	2	2	0	0	0	0	copy fasta	CTNNA1	chr5	138748425	138940034
CTNNA1_chr5_138748425_138940034	0/0	c0008	2721	1	1	0	0	0	0	copy fasta	CTNNA1	chr5	138748425	138940034
CTNNA1_chr5_138748425_138940034	0/0	c0009	2721	1	1	0	0	0	0	copy fasta	CTNNA1	chr5	138748425	138940034
CTNNA1_chr5_138748425_138940034	0/0	c0010	2721	1	0	0	1	0	0	copy fasta	CTNNA1	chr5	138748425	138940034
CTNNA1_chr5_138748425_138940034	0/0	c0011	2721	1	0	0	0	1	0	copy fasta	CTNNA1	chr5	138748425	138940034
CTNNA1_chr5_138748425_138940034	0/0	c0012	2721	1	1	0	0	0	0	copy fasta	CTNNA1	chr5	138748425	138940034
CTNNA1_chr5_138748425_138940034	0/0	c0013	2721	1	1	0	0	0	0	copy fasta	CTNNA1	chr5	138748425	138940034
CTNNA1_chr5_138748425_138940034	0/0	c0014	2721	1	1	0	0	0	0	copy fasta	CTNNA1	chr5	138748425	138940034
CTNNA2_chr2_79508051_80653780	0/0	c0001	2862	25	18	4	0	0	3	copy fasta	CTNNA2	chr2	79508051	80653780
CTNNA2_chr2_79508051_80653780	0/0	c0002	2862	14	8	4	1	0	1	copy fasta	CTNNA2	chr2	79508051	80653780
CTNNA2_chr2_79508051_80653780	0/0	c0003	2862	8	5	0	1	0	2	copy fasta	CTNNA2	chr2	79508051	80653780
CTNNA2_chr2_79508051_80653780	0/0	c0004	2862	5	5	0	0	0	0	copy fasta	CTNNA2	chr2	79508051	80653780
CTNNA2_chr2_79508051_80653780	0/0	c0005	2862	3	0	2	1	0	0	copy fasta	CTNNA2	chr2	79508051	80653780
CTNNA2_chr2_79508051_80653780	0/0	c0006	2862	3	3	0	0	0	0	copy fasta	CTNNA2	chr2	79508051	80653780
CTNNA2_chr2_79508051_80653780	0/0	c0007	2862	1	1	0	0	0	0	copy fasta	CTNNA2	chr2	79508051	80653780
CTNNA2_chr2_79508051_80653780	0/0	c0008	2862	1	1	0	0	0	0	copy fasta	CTNNA2	chr2	79508051	80653780
CTNNA2_chr2_79508051_80653780	0/0	c0009	2862	1	1	0	0	0	0	copy fasta	CTNNA2	chr2	79508051	80653780
CTNNA2_chr2_79508051_80653780	0/0	c0010	2862	1	1	0	0	0	0	copy fasta	CTNNA2	chr2	79508051	80653780
CTNNA2_chr2_79508051_80653780	0/0	c0011	2862	1	1	0	0	0	0	copy fasta	CTNNA2	chr2	79508051	80653780
CTNNA2_chr2_79508051_80653780	0/0	c0012	2862	1	0	0	1	0	0	copy fasta	CTNNA2	chr2	79508051	80653780
CTNNA2_chr2_79508051_80653780	0/0	c0013	2862	1	1	0	0	0	0	copy fasta	CTNNA2	chr2	79508051	80653780
CTNNA2_chr2_79508051_80653780	0/0	c0014	2862	1	1	0	0	0	0	copy fasta	CTNNA2	chr2	79508051	80653780
CTNNA2_chr2_79508051_80653780	0/0	c0015	2862	1	1	0	0	0	0	copy fasta	CTNNA2	chr2	79508051	80653780
CTNNA2_chr2_79508051_80653780	0/0	c0016	2862	1	1	0	0	0	0	copy fasta	CTNNA2	chr2	79508051	80653780
CTNNA3_chr10_65907523_67701195	0/0	c0001	2688	22	14	3	5	0	0	copy fasta	CTNNA3	chr10	65907523	67701195
CTNNA3_chr10_65907523_67701195	0/0	c0002	2688	9	4	2	3	0	0	copy fasta	CTNNA3	chr10	65907523	67701195
CTNNA3_chr10_65907523_67701195	0/0	c0003	2688	5	4	1	0	0	0	copy fasta	CTNNA3	chr10	65907523	67701195
CTNNA3_chr10_65907523_67701195	0/0	c0004	2688	2	2	0	0	0	0	copy fasta	CTNNA3	chr10	65907523	67701195
CTNNA3_chr10_65907523_67701195	0/0	c0005	2688	2	2	0	0	0	0	copy fasta	CTNNA3	chr10	65907523	67701195
CTNNA3_chr10_65907523_67701195	0/0	c0006	2688	1	1	0	0	0	0	copy fasta	CTNNA3	chr10	65907523	67701195
CTNNA3_chr10_65907523_67701195	0/0	c0007	2688	1	1	0	0	0	0	copy fasta	CTNNA3	chr10	65907523	67701195
CTNNA3_chr10_65907523_67701195	0/0	c0008	2688	1	1	0	0	0	0	copy fasta	CTNNA3	chr10	65907523	67701195
CTNNA3_chr10_65907523_67701195	0/0	c0009	2688	1	1	0	0	0	0	copy fasta	CTNNA3	chr10	65907523	67701195
CTNNA3_chr10_65907523_67701195	0/0	c0010	2688	1	1	0	0	0	0	copy fasta	CTNNA3	chr10	65907523	67701195
CTNNA3_chr10_65907523_67701195	0/0	c0011	2688	1	1	0	0	0	0	copy fasta	CTNNA3	chr10	65907523	67701195
CTNNAL1_chr9_108937577_109018499	1/1	c0001	2205	323	82	48	149	10	32	copy fasta	CTNNAL1	chr9	108937577	109018499
CTNNAL1_chr9_108937577_109018499	0/0	c0002	2205	80	1	21	49	4	5	copy fasta	CTNNAL1	chr9	108937577	109018499