Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ADAMTS5_chr21_26912922_26972088	0/0	c0021	2793	2	0	1	0	1	0	copy fasta	ADAMTS5	chr21	26912922	26972088
ADAMTS5_chr21_26912922_26972088	0/0	c0022	2793	1	0	0	1	0	0	copy fasta	ADAMTS5	chr21	26912922	26972088
ADAMTS5_chr21_26912922_26972088	0/0	c0023	2793	1	0	0	0	0	1	copy fasta	ADAMTS5	chr21	26912922	26972088
ADAMTS5_chr21_26912922_26972088	0/0	c0024	2793	1	1	0	0	0	0	copy fasta	ADAMTS5	chr21	26912922	26972088
ADAMTS5_chr21_26912922_26972088	0/0	c0025	2793	1	0	1	0	0	0	copy fasta	ADAMTS5	chr21	26912922	26972088
ADAMTS5_chr21_26912922_26972088	0/0	c0026	2793	1	0	0	0	0	1	copy fasta	ADAMTS5	chr21	26912922	26972088
ADAMTS5_chr21_26912922_26972088	0/0	c0027	2793	1	1	0	0	0	0	copy fasta	ADAMTS5	chr21	26912922	26972088
ADAMTS5_chr21_26912922_26972088	0/0	c0028	2793	1	0	0	0	0	1	copy fasta	ADAMTS5	chr21	26912922	26972088
ADAMTS5_chr21_26912922_26972088	0/0	c0029	2793	1	0	0	1	0	0	copy fasta	ADAMTS5	chr21	26912922	26972088
ADAMTS5_chr21_26912922_26972088	0/0	c0030	2793	1	1	0	0	0	0	copy fasta	ADAMTS5	chr21	26912922	26972088
ADAMTS5_chr21_26912922_26972088	0/0	c0031	2793	1	0	0	0	0	1	copy fasta	ADAMTS5	chr21	26912922	26972088
ADAMTS5_chr21_26912922_26972088	0/0	c0032	2793	1	0	1	0	0	0	copy fasta	ADAMTS5	chr21	26912922	26972088
ADAMTS5_chr21_26912922_26972088	0/0	c0033	2793	1	0	0	1	0	0	copy fasta	ADAMTS5	chr21	26912922	26972088
ADAMTS5_chr21_26912922_26972088	0/0	c0034	2793	1	1	0	0	0	0	copy fasta	ADAMTS5	chr21	26912922	26972088
ADAMTS5_chr21_26912922_26972088	0/0	c0035	2793	1	0	0	0	0	1	copy fasta	ADAMTS5	chr21	26912922	26972088
ADAMTS5_chr21_26912922_26972088	0/0	c0036	2793	1	0	1	0	0	0	copy fasta	ADAMTS5	chr21	26912922	26972088
ADAMTS5_chr21_26912922_26972088	0/0	c0037	2793	1	0	0	1	0	0	copy fasta	ADAMTS5	chr21	26912922	26972088
ADAMTS5_chr21_26912922_26972088	0/0	c0038	2793	1	1	0	0	0	0	copy fasta	ADAMTS5	chr21	26912922	26972088
ADAMTS5_chr21_26912922_26972088	0/0	c0039	2793	1	1	0	0	0	0	copy fasta	ADAMTS5	chr21	26912922	26972088
ADAMTS5_chr21_26912922_26972088	0/0	c0040	2793	1	0	0	1	0	0	copy fasta	ADAMTS5	chr21	26912922	26972088
ADAMTS5_chr21_26912922_26972088	0/0	c0041	2793	1	0	0	0	0	1	copy fasta	ADAMTS5	chr21	26912922	26972088
ADAMTS6_chr5_65143738_65486920	1/1	c0001	3354	187	70	38	55	6	16	copy fasta	ADAMTS6	chr5	65143738	65486920
ADAMTS6_chr5_65143738_65486920	0/0	c0002	3354	4	4	0	0	0	0	copy fasta	ADAMTS6	chr5	65143738	65486920
ADAMTS6_chr5_65143738_65486920	0/0	c0003	3354	2	0	0	2	0	0	copy fasta	ADAMTS6	chr5	65143738	65486920
ADAMTS6_chr5_65143738_65486920	0/0	c0004	3354	2	2	0	0	0	0	copy fasta	ADAMTS6	chr5	65143738	65486920
ADAMTS6_chr5_65143738_65486920	0/0	c0005	3354	1	1	0	0	0	0	copy fasta	ADAMTS6	chr5	65143738	65486920
ADAMTS6_chr5_65143738_65486920	0/0	c0006	3354	1	0	0	1	0	0	copy fasta	ADAMTS6	chr5	65143738	65486920
ADAMTS6_chr5_65143738_65486920	0/0	c0007	3354	1	1	0	0	0	0	copy fasta	ADAMTS6	chr5	65143738	65486920
ADAMTS6_chr5_65143738_65486920	0/0	c0008	3354	1	0	1	0	0	0	copy fasta	ADAMTS6	chr5	65143738	65486920
ADAMTS6_chr5_65143738_65486920	0/0	c0009	3354	1	0	0	1	0	0	copy fasta	ADAMTS6	chr5	65143738	65486920
ADAMTS6_chr5_65143738_65486920	0/0	c0010	3354	1	0	1	0	0	0	copy fasta	ADAMTS6	chr5	65143738	65486920
ADAMTS6_chr5_65143738_65486920	0/0	c0011	3354	1	0	0	0	0	1	copy fasta	ADAMTS6	chr5	65143738	65486920
ADAMTS6_chr5_65143738_65486920	0/0	c0012	3354	1	0	0	0	0	1	copy fasta	ADAMTS6	chr5	65143738	65486920
ADAMTS6_chr5_65143738_65486920	0/0	c0013	3354	1	0	0	1	0	0	copy fasta	ADAMTS6	chr5	65143738	65486920
ADAMTS7_chr15_78754206_78816464	0/0	c0001	5061	40	0	6	33	0	1	copy fasta	ADAMTS7	chr15	78754206	78816464
ADAMTS7_chr15_78754206_78816464	0/0	c0002	5061	23	2	4	14	1	2	copy fasta	ADAMTS7	chr15	78754206	78816464
ADAMTS7_chr15_78754206_78816464	0/0	c0003	5061	22	2	8	3	3	6	copy fasta	ADAMTS7	chr15	78754206	78816464
ADAMTS7_chr15_78754206_78816464	0/0	c0004	5058	22	18	4	0	0	0	copy fasta	ADAMTS7	chr15	78754206	78816464
ADAMTS7_chr15_78754206_78816464	0/1	c0005	5061	21	2	8	3	3	4	copy fasta	ADAMTS7	chr15	78754206	78816464
ADAMTS7_chr15_78754206_78816464	0/0	c0006	5061	15	1	2	8	0	4	copy fasta	ADAMTS7	chr15	78754206	78816464
ADAMTS7_chr15_78754206_78816464	0/0	c0007	5061	14	0	1	10	0	3	copy fasta	ADAMTS7	chr15	78754206	78816464
ADAMTS7_chr15_78754206_78816464	0/0	c0008	5061	12	1	5	0	2	4	copy fasta	ADAMTS7	chr15	78754206	78816464
ADAMTS7_chr15_78754206_78816464	0/0	c0009	5058	11	0	2	9	0	0	copy fasta	ADAMTS7	chr15	78754206	78816464
ADAMTS7_chr15_78754206_78816464	0/0	c0010	5061	8	0	0	8	0	0	copy fasta	ADAMTS7	chr15	78754206	78816464
ADAMTS7_chr15_78754206_78816464	0/0	c0011	5061	8	0	0	8	0	0	copy fasta	ADAMTS7	chr15	78754206	78816464
ADAMTS7_chr15_78754206_78816464	0/0	c0012	5061	8	2	4	0	0	2	copy fasta	ADAMTS7	chr15	78754206	78816464
ADAMTS7_chr15_78754206_78816464	0/0	c0013	5061	8	0	0	8	0	0	copy fasta	ADAMTS7	chr15	78754206	78816464
ADAMTS7_chr15_78754206_78816464	0/0	c0014	5061	7	1	4	1	1	0	copy fasta	ADAMTS7	chr15	78754206	78816464
ADAMTS7_chr15_78754206_78816464	0/0	c0015	5061	6	0	0	6	0	0	copy fasta	ADAMTS7	chr15	78754206	78816464
ADAMTS7_chr15_78754206_78816464	0/0	c0016	5061	5	1	3	0	0	1	copy fasta	ADAMTS7	chr15	78754206	78816464