JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CWC27_chr5_64763930_65023750	0/0	c0008	1419	1	1	0	0	0	0	copy fasta	CWC27	chr5	64763930	65023750
CWC27_chr5_64763930_65023750	0/0	c0009	1419	1	1	0	0	0	0	copy fasta	CWC27	chr5	64763930	65023750
CWC27_chr5_64763930_65023750	0/0	c0010	1419	1	1	0	0	0	0	copy fasta	CWC27	chr5	64763930	65023750
CWF19L1_chr10_100227298_100272638	1/0	c0001	1617	181	25	52	78	5	20	copy fasta	CWF19L1	chr10	100227298	100272638
CWF19L1_chr10_100227298_100272638	0/0	c0002	1617	61	13	2	44	0	2	copy fasta	CWF19L1	chr10	100227298	100272638
CWF19L1_chr10_100227298_100272638	0/0	c0003	1617	40	15	0	22	0	3	copy fasta	CWF19L1	chr10	100227298	100272638
CWF19L1_chr10_100227298_100272638	0/0	c0004	1617	36	8	5	18	1	4	copy fasta	CWF19L1	chr10	100227298	100272638
CWF19L1_chr10_100227298_100272638	0/0	c0005	1617	18	17	1	0	0	0	copy fasta	CWF19L1	chr10	100227298	100272638
CWF19L1_chr10_100227298_100272638	0/0	c0006	1617	9	7	2	0	0	0	copy fasta	CWF19L1	chr10	100227298	100272638
CWF19L1_chr10_100227298_100272638	0/0	c0007	1617	5	0	0	5	0	0	copy fasta	CWF19L1	chr10	100227298	100272638
CWF19L1_chr10_100227298_100272638	0/0	c0008	1617	2	0	0	2	0	0	copy fasta	CWF19L1	chr10	100227298	100272638
CWF19L1_chr10_100227298_100272638	0/0	c0009	1617	2	2	0	0	0	0	copy fasta	CWF19L1	chr10	100227298	100272638
CWF19L1_chr10_100227298_100272638	0/0	c0010	1617	2	0	0	0	2	0	copy fasta	CWF19L1	chr10	100227298	100272638
CWF19L1_chr10_100227298_100272638	0/1	c0011	1617	2	0	0	0	0	1	copy fasta	CWF19L1	chr10	100227298	100272638
CWF19L1_chr10_100227298_100272638	0/0	c0012	1617	2	2	0	0	0	0	copy fasta	CWF19L1	chr10	100227298	100272638
CWF19L1_chr10_100227298_100272638	0/0	c0013	1617	2	0	0	2	0	0	copy fasta	CWF19L1	chr10	100227298	100272638
CWF19L1_chr10_100227298_100272638	0/0	c0014	1617	1	0	0	1	0	0	copy fasta	CWF19L1	chr10	100227298	100272638
CWF19L1_chr10_100227298_100272638	0/0	c0015	1617	1	1	0	0	0	0	copy fasta	CWF19L1	chr10	100227298	100272638
CWF19L2_chr11_107321360_107462825	1/1	c0001	2685	201	48	37	82	6	26	copy fasta	CWF19L2	chr11	107321360	107462825
CWF19L2_chr11_107321360_107462825	0/0	c0002	2685	90	15	11	48	5	11	copy fasta	CWF19L2	chr11	107321360	107462825
CWF19L2_chr11_107321360_107462825	0/0	c0003	2685	44	1	2	39	1	1	copy fasta	CWF19L2	chr11	107321360	107462825
CWF19L2_chr11_107321360_107462825	0/0	c0004	2685	27	13	12	0	2	0	copy fasta	CWF19L2	chr11	107321360	107462825
CWF19L2_chr11_107321360_107462825	0/0	c0005	2685	6	0	0	6	0	0	copy fasta	CWF19L2	chr11	107321360	107462825
CWF19L2_chr11_107321360_107462825	0/0	c0006	2685	5	5	0	0	0	0	copy fasta	CWF19L2	chr11	107321360	107462825
CWF19L2_chr11_107321360_107462825	0/0	c0007	2685	3	2	1	0	0	0	copy fasta	CWF19L2	chr11	107321360	107462825
CWF19L2_chr11_107321360_107462825	0/0	c0008	2685	2	2	0	0	0	0	copy fasta	CWF19L2	chr11	107321360	107462825
CWF19L2_chr11_107321360_107462825	0/0	c0009	2685	2	2	0	0	0	0	copy fasta	CWF19L2	chr11	107321360	107462825
CWF19L2_chr11_107321360_107462825	0/0	c0010	2685	2	0	1	1	0	0	copy fasta	CWF19L2	chr11	107321360	107462825
CWF19L2_chr11_107321360_107462825	0/0	c0011	2685	2	2	0	0	0	0	copy fasta	CWF19L2	chr11	107321360	107462825
CWF19L2_chr11_107321360_107462825	0/0	c0012	2685	2	0	0	2	0	0	copy fasta	CWF19L2	chr11	107321360	107462825
CWF19L2_chr11_107321360_107462825	0/0	c0013	2685	1	0	0	1	0	0	copy fasta	CWF19L2	chr11	107321360	107462825
CWF19L2_chr11_107321360_107462825	0/0	c0014	2685	1	0	0	1	0	0	copy fasta	CWF19L2	chr11	107321360	107462825
CWF19L2_chr11_107321360_107462825	0/0	c0015	2685	1	1	0	0	0	0	copy fasta	CWF19L2	chr11	107321360	107462825
CWF19L2_chr11_107321360_107462825	0/0	c0016	2685	1	0	0	1	0	0	copy fasta	CWF19L2	chr11	107321360	107462825
CWF19L2_chr11_107321360_107462825	0/0	c0017	2685	1	1	0	0	0	0	copy fasta	CWF19L2	chr11	107321360	107462825
CWF19L2_chr11_107321360_107462825	0/0	c0018	2685	1	0	0	1	0	0	copy fasta	CWF19L2	chr11	107321360	107462825
CWH43_chr4_48981275_49067079	1/1	c0001	2100	124	48	6	55	1	12	copy fasta	CWH43	chr4	48981275	49067079
CWH43_chr4_48981275_49067079	0/0	c0002	2100	85	10	26	33	7	9	copy fasta	CWH43	chr4	48981275	49067079
CWH43_chr4_48981275_49067079	0/0	c0003	2100	67	7	18	29	6	7	copy fasta	CWH43	chr4	48981275	49067079
CWH43_chr4_48981275_49067079	0/0	c0004	2099	9	0	5	1	2	1	copy fasta	CWH43	chr4	48981275	49067079
CWH43_chr4_48981275_49067079	0/0	c0005	2100	3	0	3	0	0	0	copy fasta	CWH43	chr4	48981275	49067079
CWH43_chr4_48981275_49067079	0/0	c0006	2100	2	0	2	0	0	0	copy fasta	CWH43	chr4	48981275	49067079
CWH43_chr4_48981275_49067079	0/0	c0007	2100	2	0	0	0	0	2	copy fasta	CWH43	chr4	48981275	49067079
CWH43_chr4_48981275_49067079	0/0	c0008	2100	2	2	0	0	0	0	copy fasta	CWH43	chr4	48981275	49067079
CWH43_chr4_48981275_49067079	0/0	c0009	2100	1	0	0	0	0	1	copy fasta	CWH43	chr4	48981275	49067079
CWH43_chr4_48981275_49067079	0/0	c0010	2100	1	1	0	0	0	0	copy fasta	CWH43	chr4	48981275	49067079
CX3CL1_chr16_57367490_57390044	1/1	c0001	1194	411	83	70	197	15	44	copy fasta	CX3CL1	chr16	57367490	57390044
CX3CL1_chr16_57367490_57390044	0/0	c0002	1194	6	6	0	0	0	0	copy fasta	CX3CL1	chr16	57367490	57390044
CX3CL1_chr16_57367490_57390044	0/0	c0003	1194	3	3	0	0	0	0	copy fasta	CX3CL1	chr16	57367490	57390044
CX3CL1_chr16_57367490_57390044	0/0	c0004	1194	1	1	0	0	0	0	copy fasta	CX3CL1	chr16	57367490	57390044