JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CXCR1_chr2_218157841_218171962	0/0	c0011	1053	1	0	0	0	0	1	copy fasta	CXCR1	chr2	218157841	218171962
CXCR2_chr2_218121028_218142251	0/1	c0001	1083	167	47	35	58	6	20	copy fasta	CXCR2	chr2	218121028	218142251
CXCR2_chr2_218121028_218142251	1/0	c0002	1083	157	21	27	90	6	12	copy fasta	CXCR2	chr2	218121028	218142251
CXCR2_chr2_218121028_218142251	0/0	c0003	1083	16	3	3	5	0	5	copy fasta	CXCR2	chr2	218121028	218142251
CXCR2_chr2_218121028_218142251	0/0	c0004	1083	12	10	2	0	0	0	copy fasta	CXCR2	chr2	218121028	218142251
CXCR2_chr2_218121028_218142251	0/0	c0005	1083	5	5	0	0	0	0	copy fasta	CXCR2	chr2	218121028	218142251
CXCR2_chr2_218121028_218142251	0/0	c0006	1083	1	1	0	0	0	0	copy fasta	CXCR2	chr2	218121028	218142251
CXCR2_chr2_218121028_218142251	0/0	c0007	1083	1	0	0	0	0	1	copy fasta	CXCR2	chr2	218121028	218142251
CXCR2_chr2_218121028_218142251	0/0	c0008	1083	1	0	1	0	0	0	copy fasta	CXCR2	chr2	218121028	218142251
CXCR2_chr2_218121028_218142251	0/0	c0009	1083	1	1	0	0	0	0	copy fasta	CXCR2	chr2	218121028	218142251
CXCR2_chr2_218121028_218142251	0/0	c0010	1083	1	1	0	0	0	0	copy fasta	CXCR2	chr2	218121028	218142251
CXCR2_chr2_218121028_218142251	0/0	c0011	1083	1	0	0	1	0	0	copy fasta	CXCR2	chr2	218121028	218142251
CXCR2_chr2_218121028_218142251	0/0	c0012	1083	1	1	0	0	0	0	copy fasta	CXCR2	chr2	218121028	218142251
CXCR3_chrX_71610919_71623511	1/1	c0001	1107	321	69	57	152	9	32	copy fasta	CXCR3	chrX	71610919	71623511
CXCR3_chrX_71610919_71623511	0/0	c0002	1108	1	0	0	1	0	0	copy fasta	CXCR3	chrX	71610919	71623511
CXCR3_chrX_71610919_71623511	0/0	c0003	1107	1	1	0	0	0	0	copy fasta	CXCR3	chrX	71610919	71623511
CXCR4_chr2_136109349_136123149	1/1	c0001	1059	384	96	79	157	14	36	copy fasta	CXCR4	chr2	136109349	136123149
CXCR4_chr2_136109349_136123149	0/0	c0002	1059	19	0	1	16	0	2	copy fasta	CXCR4	chr2	136109349	136123149
CXCR4_chr2_136109349_136123149	0/0	c0003	1059	1	0	1	0	0	0	copy fasta	CXCR4	chr2	136109349	136123149
CXCR4_chr2_136109349_136123149	0/0	c0004	1059	1	0	1	0	0	0	copy fasta	CXCR4	chr2	136109349	136123149
CXCR4_chr2_136109349_136123149	0/0	c0005	1059	1	0	0	1	0	0	copy fasta	CXCR4	chr2	136109349	136123149
CXCR5_chr11_118878892_118902787	1/0	c0001	1119	245	42	50	99	11	42	copy fasta	CXCR5	chr11	118878892	118902787
CXCR5_chr11_118878892_118902787	0/1	c0002	1119	84	26	23	29	1	4	copy fasta	CXCR5	chr11	118878892	118902787
CXCR5_chr11_118878892_118902787	0/0	c0003	1119	20	18	2	0	0	0	copy fasta	CXCR5	chr11	118878892	118902787
CXCR5_chr11_118878892_118902787	0/0	c0004	1119	7	6	1	0	0	0	copy fasta	CXCR5	chr11	118878892	118902787
CXCR5_chr11_118878892_118902787	0/0	c0005	1119	6	4	1	0	1	0	copy fasta	CXCR5	chr11	118878892	118902787
CXCR5_chr11_118878892_118902787	0/0	c0006	1119	2	0	1	0	1	0	copy fasta	CXCR5	chr11	118878892	118902787
CXCR5_chr11_118878892_118902787	0/0	c0007	1119	1	0	0	1	0	0	copy fasta	CXCR5	chr11	118878892	118902787
CXCR5_chr11_118878892_118902787	0/0	c0008	1119	1	1	0	0	0	0	copy fasta	CXCR5	chr11	118878892	118902787
CXCR5_chr11_118878892_118902787	0/0	c0009	1119	1	1	0	0	0	0	copy fasta	CXCR5	chr11	118878892	118902787
CXCR5_chr11_118878892_118902787	0/0	c0010	1119	1	0	0	1	0	0	copy fasta	CXCR5	chr11	118878892	118902787
CXCR6_chr3_45938464_45953351	1/1	c0001	1029	369	47	62	201	15	42	copy fasta	CXCR6	chr3	45938464	45953351
CXCR6_chr3_45938464_45953351	0/0	c0002	1029	43	40	3	0	0	0	copy fasta	CXCR6	chr3	45938464	45953351
CXCR6_chr3_45938464_45953351	0/0	c0003	1029	6	5	1	0	0	0	copy fasta	CXCR6	chr3	45938464	45953351
CXCR6_chr3_45938464_45953351	0/0	c0004	1029	1	0	0	0	1	0	copy fasta	CXCR6	chr3	45938464	45953351
CXCR6_chr3_45938464_45953351	0/0	c0005	1029	1	0	0	1	0	0	copy fasta	CXCR6	chr3	45938464	45953351
CXXC1_chr18_50277347_50292692	0/1	c0001	1971	228	54	46	105	4	18	copy fasta	CXXC1	chr18	50277347	50292692
CXXC1_chr18_50277347_50292692	1/0	c0002	1971	131	37	18	57	5	13	copy fasta	CXXC1	chr18	50277347	50292692
CXXC1_chr18_50277347_50292692	0/0	c0003	1971	30	0	7	9	3	11	copy fasta	CXXC1	chr18	50277347	50292692
CXXC1_chr18_50277347_50292692	0/0	c0004	1971	18	0	8	0	6	4	copy fasta	CXXC1	chr18	50277347	50292692
CXXC1_chr18_50277347_50292692	0/0	c0005	1971	3	0	0	3	0	0	copy fasta	CXXC1	chr18	50277347	50292692
CXXC1_chr18_50277347_50292692	0/0	c0006	1971	2	2	0	0	0	0	copy fasta	CXXC1	chr18	50277347	50292692
CXXC1_chr18_50277347_50292692	0/0	c0007	1971	2	0	0	2	0	0	copy fasta	CXXC1	chr18	50277347	50292692
CXXC1_chr18_50277347_50292692	0/0	c0008	1971	1	1	0	0	0	0	copy fasta	CXXC1	chr18	50277347	50292692
CXXC1_chr18_50277347_50292692	0/0	c0009	1971	1	1	0	0	0	0	copy fasta	CXXC1	chr18	50277347	50292692
CXXC1_chr18_50277347_50292692	0/0	c0010	1971	1	0	0	1	0	0	copy fasta	CXXC1	chr18	50277347	50292692
CXXC1_chr18_50277347_50292692	0/0	c0011	1971	1	1	0	0	0	0	copy fasta	CXXC1	chr18	50277347	50292692
CXXC1_chr18_50277347_50292692	0/0	c0012	1971	1	1	0	0	0	0	copy fasta	CXXC1	chr18	50277347	50292692
CXXC1_chr18_50277347_50292692	0/0	c0013	1971	1	1	0	0	0	0	copy fasta	CXXC1	chr18	50277347	50292692
CXXC1_chr18_50277347_50292692	0/0	c0014	1971	1	0	0	1	0	0	copy fasta	CXXC1	chr18	50277347	50292692