JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CYFIP2_chr5_157261123_157400594	0/0	c0011	3762	1	1	0	0	0	0	copy fasta	CYFIP2	chr5	157261123	157400594
CYFIP2_chr5_157261123_157400594	0/0	c0012	3762	1	0	0	1	0	0	copy fasta	CYFIP2	chr5	157261123	157400594
CYGB_chr17_76522356_76542709	1/1	c0001	573	377	87	67	158	16	47	copy fasta	CYGB	chr17	76522356	76542709
CYGB_chr17_76522356_76542709	0/0	c0002	573	13	10	3	0	0	0	copy fasta	CYGB	chr17	76522356	76542709
CYGB_chr17_76522356_76542709	0/0	c0003	573	4	0	4	0	0	0	copy fasta	CYGB	chr17	76522356	76542709
CYGB_chr17_76522356_76542709	0/0	c0004	573	1	1	0	0	0	0	copy fasta	CYGB	chr17	76522356	76542709
CYGB_chr17_76522356_76542709	0/0	c0005	573	1	0	0	0	0	1	copy fasta	CYGB	chr17	76522356	76542709
CYLC1_chrX_83856146_83891698	1/1	c0001	1956	173	29	31	79	11	21	copy fasta	CYLC1	chrX	83856146	83891698
CYLC1_chrX_83856146_83891698	0/0	c0002	1956	12	10	2	0	0	0	copy fasta	CYLC1	chrX	83856146	83891698
CYLC1_chrX_83856146_83891698	0/0	c0003	1956	6	0	2	4	0	0	copy fasta	CYLC1	chrX	83856146	83891698
CYLC1_chrX_83856146_83891698	0/0	c0004	1956	4	0	2	2	0	0	copy fasta	CYLC1	chrX	83856146	83891698
CYLC1_chrX_83856146_83891698	0/0	c0005	1956	2	0	0	0	0	2	copy fasta	CYLC1	chrX	83856146	83891698
CYLC1_chrX_83856146_83891698	0/0	c0006	1956	2	0	0	0	0	2	copy fasta	CYLC1	chrX	83856146	83891698
CYLC1_chrX_83856146_83891698	0/0	c0007	1956	2	0	2	0	0	0	copy fasta	CYLC1	chrX	83856146	83891698
CYLC1_chrX_83856146_83891698	0/0	c0008	1957	1	0	0	1	0	0	copy fasta	CYLC1	chrX	83856146	83891698
CYLC1_chrX_83856146_83891698	0/0	c0009	1956	1	0	0	0	0	1	copy fasta	CYLC1	chrX	83856146	83891698
CYLC1_chrX_83856146_83891698	0/0	c0010	1956	1	0	0	0	0	1	copy fasta	CYLC1	chrX	83856146	83891698
CYLC1_chrX_83856146_83891698	0/0	c0011	1955	1	0	0	1	0	0	copy fasta	CYLC1	chrX	83856146	83891698
CYLC1_chrX_83856146_83891698	0/0	c0012	1957	1	0	0	1	0	0	copy fasta	CYLC1	chrX	83856146	83891698
CYLC1_chrX_83856146_83891698	0/0	c0013	1956	1	0	0	1	0	0	copy fasta	CYLC1	chrX	83856146	83891698
CYLC1_chrX_83856146_83891698	0/0	c0014	1959	1	1	0	0	0	0	copy fasta	CYLC1	chrX	83856146	83891698
CYLC2_chr9_102990333_103023488	1/1	c0001	1047	390	81	82	173	9	43	copy fasta	CYLC2	chr9	102990333	103023488
CYLC2_chr9_102990333_103023488	0/0	c0002	1047	36	0	0	34	1	1	copy fasta	CYLC2	chr9	102990333	103023488
CYLC2_chr9_102990333_103023488	0/0	c0003	1035	4	3	1	0	0	0	copy fasta	CYLC2	chr9	102990333	103023488
CYLC2_chr9_102990333_103023488	0/0	c0004	1047	3	0	0	3	0	0	copy fasta	CYLC2	chr9	102990333	103023488
CYLC2_chr9_102990333_103023488	0/0	c0005	1047	2	2	0	0	0	0	copy fasta	CYLC2	chr9	102990333	103023488
CYLC2_chr9_102990333_103023488	0/0	c0006	1035	2	2	0	0	0	0	copy fasta	CYLC2	chr9	102990333	103023488
CYLC2_chr9_102990333_103023488	0/0	c0007	1047	2	2	0	0	0	0	copy fasta	CYLC2	chr9	102990333	103023488
CYLC2_chr9_102990333_103023488	0/0	c0008	1047	2	1	1	0	0	0	copy fasta	CYLC2	chr9	102990333	103023488
CYLC2_chr9_102990333_103023488	0/0	c0009	1047	1	1	0	0	0	0	copy fasta	CYLC2	chr9	102990333	103023488
CYLC2_chr9_102990333_103023488	0/0	c0010	1047	1	0	0	1	0	0	copy fasta	CYLC2	chr9	102990333	103023488
CYLC2_chr9_102990333_103023488	0/0	c0011	1047	1	0	0	1	0	0	copy fasta	CYLC2	chr9	102990333	103023488
CYLC2_chr9_102990333_103023488	0/0	c0012	1047	1	1	0	0	0	0	copy fasta	CYLC2	chr9	102990333	103023488
CYLC2_chr9_102990333_103023488	0/0	c0013	1047	1	0	0	1	0	0	copy fasta	CYLC2	chr9	102990333	103023488
CYLC2_chr9_102990333_103023488	0/0	c0014	1047	1	1	0	0	0	0	copy fasta	CYLC2	chr9	102990333	103023488
CYLC2_chr9_102990333_103023488	0/0	c0015	1047	1	0	0	1	0	0	copy fasta	CYLC2	chr9	102990333	103023488
CYLD_chr16_50737086_50806935	1/1	c0001	2871	258	73	48	103	12	20	copy fasta	CYLD	chr16	50737086	50806935
CYLD_chr16_50737086_50806935	0/0	c0002	2871	33	3	7	17	0	6	copy fasta	CYLD	chr16	50737086	50806935
CYLD_chr16_50737086_50806935	0/0	c0003	2871	7	7	0	0	0	0	copy fasta	CYLD	chr16	50737086	50806935
CYLD_chr16_50737086_50806935	0/0	c0004	2871	1	0	0	1	0	0	copy fasta	CYLD	chr16	50737086	50806935
CYLD_chr16_50737086_50806935	0/0	c0005	2871	1	0	1	0	0	0	copy fasta	CYLD	chr16	50737086	50806935
CYLD_chr16_50737086_50806935	0/0	c0006	2871	1	1	0	0	0	0	copy fasta	CYLD	chr16	50737086	50806935
CYLD_chr16_50737086_50806935	0/0	c0007	2871	1	0	0	1	0	0	copy fasta	CYLD	chr16	50737086	50806935
CYP11A1_chr15_74332762_74372646	1/1	c0001	1566	373	87	59	177	10	38	copy fasta	CYP11A1	chr15	74332762	74372646
CYP11A1_chr15_74332762_74372646	0/0	c0002	1566	1	0	1	0	0	0	copy fasta	CYP11A1	chr15	74332762	74372646
CYP11A1_chr15_74332762_74372646	0/0	c0003	1566	1	1	0	0	0	0	copy fasta	CYP11A1	chr15	74332762	74372646
CYP11A1_chr15_74332762_74372646	0/0	c0004	1566	1	1	0	0	0	0	copy fasta	CYP11A1	chr15	74332762	74372646
CYP11A1_chr15_74332762_74372646	0/0	c0005	1566	1	0	0	1	0	0	copy fasta	CYP11A1	chr15	74332762	74372646
CYP11A1_chr15_74332762_74372646	0/0	c0006	1566	1	0	0	0	0	1	copy fasta	CYP11A1	chr15	74332762	74372646
CYP11A1_chr15_74332762_74372646	0/0	c0007	1566	1	0	0	0	0	1	copy fasta	CYP11A1	chr15	74332762	74372646