JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
DBX2_chr12_45009672_45056099	0/0	c0009	1020	1	0	0	1	0	0	copy fasta	DBX2	chr12	45009672	45056099
DBX2_chr12_45009672_45056099	0/0	c0010	1020	1	1	0	0	0	0	copy fasta	DBX2	chr12	45009672	45056099
DBX2_chr12_45009672_45056099	0/0	c0011	1020	1	0	0	1	0	0	copy fasta	DBX2	chr12	45009672	45056099
DBX2_chr12_45009672_45056099	0/0	c0012	1020	1	0	0	1	0	0	copy fasta	DBX2	chr12	45009672	45056099
DCAF10_chr9_37795797_37872664	1/1	c0001	1680	348	73	71	146	12	44	copy fasta	DCAF10	chr9	37795797	37872664
DCAF10_chr9_37795797_37872664	0/0	c0002	1680	3	3	0	0	0	0	copy fasta	DCAF10	chr9	37795797	37872664
DCAF10_chr9_37795797_37872664	0/0	c0003	1680	1	1	0	0	0	0	copy fasta	DCAF10	chr9	37795797	37872664
DCAF10_chr9_37795797_37872664	0/0	c0004	1680	1	0	0	1	0	0	copy fasta	DCAF10	chr9	37795797	37872664
DCAF10_chr9_37795797_37872664	0/0	c0005	1680	1	0	0	1	0	0	copy fasta	DCAF10	chr9	37795797	37872664
DCAF10_chr9_37795797_37872664	0/0	c0006	1680	1	0	1	0	0	0	copy fasta	DCAF10	chr9	37795797	37872664
DCAF10_chr9_37795797_37872664	0/0	c0007	1680	1	1	0	0	0	0	copy fasta	DCAF10	chr9	37795797	37872664
DCAF11_chr14_24109777_24130242	1/0	c0001	1641	223	55	29	111	7	20	copy fasta	DCAF11	chr14	24109777	24130242
DCAF11_chr14_24109777_24130242	0/1	c0002	1641	160	29	35	73	7	15	copy fasta	DCAF11	chr14	24109777	24130242
DCAF11_chr14_24109777_24130242	0/0	c0003	1641	18	3	2	8	0	5	copy fasta	DCAF11	chr14	24109777	24130242
DCAF11_chr14_24109777_24130242	0/0	c0004	1641	5	5	0	0	0	0	copy fasta	DCAF11	chr14	24109777	24130242
DCAF11_chr14_24109777_24130242	0/0	c0005	1641	2	0	0	2	0	0	copy fasta	DCAF11	chr14	24109777	24130242
DCAF11_chr14_24109777_24130242	0/0	c0006	1641	1	1	0	0	0	0	copy fasta	DCAF11	chr14	24109777	24130242
DCAF11_chr14_24109777_24130242	0/0	c0007	1641	1	1	0	0	0	0	copy fasta	DCAF11	chr14	24109777	24130242
DCAF11_chr14_24109777_24130242	0/0	c0008	1641	1	0	0	1	0	0	copy fasta	DCAF11	chr14	24109777	24130242
DCAF11_chr14_24109777_24130242	0/0	c0009	1641	1	1	0	0	0	0	copy fasta	DCAF11	chr14	24109777	24130242
DCAF11_chr14_24109777_24130242	0/0	c0010	1641	1	0	0	1	0	0	copy fasta	DCAF11	chr14	24109777	24130242
DCAF11_chr14_24109777_24130242	0/0	c0011	1641	1	0	1	0	0	0	copy fasta	DCAF11	chr14	24109777	24130242
DCAF11_chr14_24109777_24130242	0/0	c0012	1641	1	0	1	0	0	0	copy fasta	DCAF11	chr14	24109777	24130242
DCAF11_chr14_24109777_24130242	0/0	c0013	1641	1	1	0	0	0	0	copy fasta	DCAF11	chr14	24109777	24130242
DCAF12L1_chrX_126544383_126557814	1/1	c0001	1392	228	57	45	89	10	25	copy fasta	DCAF12L1	chrX	126544383	126557814
DCAF12L1_chrX_126544383_126557814	0/0	c0002	1392	40	15	3	19	1	2	copy fasta	DCAF12L1	chrX	126544383	126557814
DCAF12L1_chrX_126544383_126557814	0/0	c0003	1392	3	3	0	0	0	0	copy fasta	DCAF12L1	chrX	126544383	126557814
DCAF12L1_chrX_126544383_126557814	0/0	c0004	1392	2	2	0	0	0	0	copy fasta	DCAF12L1	chrX	126544383	126557814
DCAF12L1_chrX_126544383_126557814	0/0	c0005	1392	1	0	1	0	0	0	copy fasta	DCAF12L1	chrX	126544383	126557814
DCAF12L1_chrX_126544383_126557814	0/0	c0006	1391	1	0	0	1	0	0	copy fasta	DCAF12L1	chrX	126544383	126557814
DCAF12L1_chrX_126544383_126557814	0/0	c0007	1392	1	1	0	0	0	0	copy fasta	DCAF12L1	chrX	126544383	126557814
DCAF12L1_chrX_126544383_126557814	0/0	c0008	1391	1	0	0	1	0	0	copy fasta	DCAF12L1	chrX	126544383	126557814
DCAF12L1_chrX_126544383_126557814	0/0	c0009	1392	1	0	1	0	0	0	copy fasta	DCAF12L1	chrX	126544383	126557814
DCAF12L1_chrX_126544383_126557814	0/0	c0010	1390	1	0	0	1	0	0	copy fasta	DCAF12L1	chrX	126544383	126557814
DCAF12L1_chrX_126544383_126557814	0/0	c0011	1392	1	0	0	1	0	0	copy fasta	DCAF12L1	chrX	126544383	126557814
DCAF12L1_chrX_126544383_126557814	0/0	c0012	1392	1	0	0	0	0	1	copy fasta	DCAF12L1	chrX	126544383	126557814
DCAF12L1_chrX_126544383_126557814	0/0	c0013	1392	1	0	0	1	0	0	copy fasta	DCAF12L1	chrX	126544383	126557814
DCAF12L1_chrX_126544383_126557814	0/0	c0014	1392	1	0	0	1	0	0	copy fasta	DCAF12L1	chrX	126544383	126557814
DCAF12L1_chrX_126544383_126557814	0/0	c0015	1394	1	0	0	1	0	0	copy fasta	DCAF12L1	chrX	126544383	126557814
DCAF12L2_chrX_126158499_126171289	0/0	c0001	1392	174	55	24	78	5	12	copy fasta	DCAF12L2	chrX	126158499	126171289
DCAF12L2_chrX_126158499_126171289	1/1	c0002	1392	134	15	29	65	8	15	copy fasta	DCAF12L2	chrX	126158499	126171289
DCAF12L2_chrX_126158499_126171289	0/0	c0003	1392	5	5	0	0	0	0	copy fasta	DCAF12L2	chrX	126158499	126171289
DCAF12L2_chrX_126158499_126171289	0/0	c0004	1392	2	1	1	0	0	0	copy fasta	DCAF12L2	chrX	126158499	126171289
DCAF12L2_chrX_126158499_126171289	0/0	c0005	1392	1	1	0	0	0	0	copy fasta	DCAF12L2	chrX	126158499	126171289
DCAF12L2_chrX_126158499_126171289	0/0	c0006	1392	1	1	0	0	0	0	copy fasta	DCAF12L2	chrX	126158499	126171289
DCAF12L2_chrX_126158499_126171289	0/0	c0007	1392	1	1	0	0	0	0	copy fasta	DCAF12L2	chrX	126158499	126171289
DCAF12L2_chrX_126158499_126171289	0/0	c0008	1391	1	1	0	0	0	0	copy fasta	DCAF12L2	chrX	126158499	126171289
DCAF12L2_chrX_126158499_126171289	0/0	c0009	1392	1	0	0	1	0	0	copy fasta	DCAF12L2	chrX	126158499	126171289
DCAF12_chr9_34081387_34131698	1/1	c0001	1362	264	93	54	75	9	31	copy fasta	DCAF12	chr9	34081387	34131698
DCAF12_chr9_34081387_34131698	0/0	c0002	1362	89	1	21	52	3	12	copy fasta	DCAF12	chr9	34081387	34131698