JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
DCAF12_chr9_34081387_34131698	0/0	c0003	1362	14	1	4	0	6	3	copy fasta	DCAF12	chr9	34081387	34131698
DCAF12_chr9_34081387_34131698	0/0	c0004	1362	1	0	1	0	0	0	copy fasta	DCAF12	chr9	34081387	34131698
DCAF12_chr9_34081387_34131698	0/0	c0005	1362	1	1	0	0	0	0	copy fasta	DCAF12	chr9	34081387	34131698
DCAF12_chr9_34081387_34131698	0/0	c0006	1362	1	0	0	1	0	0	copy fasta	DCAF12	chr9	34081387	34131698
DCAF13_chr8_103410386_103448453	1/0	c0001	1338	225	71	41	77	11	24	copy fasta	DCAF13	chr8	103410386	103448453
DCAF13_chr8_103410386_103448453	0/1	c0002	1338	103	15	22	54	3	8	copy fasta	DCAF13	chr8	103410386	103448453
DCAF13_chr8_103410386_103448453	0/0	c0003	1338	7	1	3	1	2	0	copy fasta	DCAF13	chr8	103410386	103448453
DCAF13_chr8_103410386_103448453	0/0	c0004	1338	3	3	0	0	0	0	copy fasta	DCAF13	chr8	103410386	103448453
DCAF13_chr8_103410386_103448453	0/0	c0005	1338	1	0	1	0	0	0	copy fasta	DCAF13	chr8	103410386	103448453
DCAF13_chr8_103410386_103448453	0/0	c0006	1338	1	1	0	0	0	0	copy fasta	DCAF13	chr8	103410386	103448453
DCAF13_chr8_103410386_103448453	0/0	c0007	1338	1	1	0	0	0	0	copy fasta	DCAF13	chr8	103410386	103448453
DCAF13_chr8_103410386_103448453	0/0	c0008	1338	1	0	1	0	0	0	copy fasta	DCAF13	chr8	103410386	103448453
DCAF15_chr19_13947509_13966449	1/1	c0001	1803	199	23	44	99	9	22	copy fasta	DCAF15	chr19	13947509	13966449
DCAF15_chr19_13947509_13966449	0/0	c0002	1823	85	23	14	31	5	12	copy fasta	DCAF15	chr19	13947509	13966449
DCAF15_chr19_13947509_13966449	0/0	c0003	1823	43	2	11	20	1	9	copy fasta	DCAF15	chr19	13947509	13966449
DCAF15_chr19_13947509_13966449	0/0	c0004	1803	21	20	1	0	0	0	copy fasta	DCAF15	chr19	13947509	13966449
DCAF15_chr19_13947509_13966449	0/0	c0005	1803	9	8	1	0	0	0	copy fasta	DCAF15	chr19	13947509	13966449
DCAF15_chr19_13947509_13966449	0/0	c0006	1823	8	0	0	8	0	0	copy fasta	DCAF15	chr19	13947509	13966449
DCAF15_chr19_13947509_13966449	0/0	c0007	1843	7	7	0	0	0	0	copy fasta	DCAF15	chr19	13947509	13966449
DCAF15_chr19_13947509_13966449	0/0	c0008	1803	4	3	0	0	0	1	copy fasta	DCAF15	chr19	13947509	13966449
DCAF15_chr19_13947509_13966449	0/0	c0009	1803	4	4	0	0	0	0	copy fasta	DCAF15	chr19	13947509	13966449
DCAF15_chr19_13947509_13966449	0/0	c0010	1803	3	1	0	1	1	0	copy fasta	DCAF15	chr19	13947509	13966449
DCAF15_chr19_13947509_13966449	0/0	c0011	1803	3	3	0	0	0	0	copy fasta	DCAF15	chr19	13947509	13966449
DCAF15_chr19_13947509_13966449	0/0	c0012	1823	2	2	0	0	0	0	copy fasta	DCAF15	chr19	13947509	13966449
DCAF15_chr19_13947509_13966449	0/0	c0013	1823	2	0	0	0	0	2	copy fasta	DCAF15	chr19	13947509	13966449
DCAF15_chr19_13947509_13966449	0/0	c0014	1823	1	0	0	0	0	1	copy fasta	DCAF15	chr19	13947509	13966449
DCAF15_chr19_13947509_13966449	0/0	c0015	1823	1	0	0	1	0	0	copy fasta	DCAF15	chr19	13947509	13966449
DCAF15_chr19_13947509_13966449	0/0	c0016	1823	1	0	0	1	0	0	copy fasta	DCAF15	chr19	13947509	13966449
DCAF15_chr19_13947509_13966449	0/0	c0017	1803	1	1	0	0	0	0	copy fasta	DCAF15	chr19	13947509	13966449
DCAF15_chr19_13947509_13966449	0/0	c0018	1823	1	0	1	0	0	0	copy fasta	DCAF15	chr19	13947509	13966449
DCAF15_chr19_13947509_13966449	0/0	c0019	1803	1	0	0	0	0	1	copy fasta	DCAF15	chr19	13947509	13966449
DCAF15_chr19_13947509_13966449	0/0	c0020	1803	1	0	0	1	0	0	copy fasta	DCAF15	chr19	13947509	13966449
DCAF15_chr19_13947509_13966449	0/0	c0021	1803	1	0	0	1	0	0	copy fasta	DCAF15	chr19	13947509	13966449
DCAF15_chr19_13947509_13966449	0/0	c0022	1803	1	1	0	0	0	0	copy fasta	DCAF15	chr19	13947509	13966449
DCAF15_chr19_13947509_13966449	0/0	c0023	1823	1	0	0	1	0	0	copy fasta	DCAF15	chr19	13947509	13966449
DCAF16_chr4_17795655_17815757	1/1	c0001	651	362	67	71	176	8	38	copy fasta	DCAF16	chr4	17795655	17815757
DCAF16_chr4_17795655_17815757	0/0	c0002	651	50	23	1	20	0	6	copy fasta	DCAF16	chr4	17795655	17815757
DCAF16_chr4_17795655_17815757	0/0	c0003	651	4	2	2	0	0	0	copy fasta	DCAF16	chr4	17795655	17815757
DCAF16_chr4_17795655_17815757	0/0	c0004	651	4	0	0	4	0	0	copy fasta	DCAF16	chr4	17795655	17815757
DCAF16_chr4_17795655_17815757	0/0	c0005	651	2	2	0	0	0	0	copy fasta	DCAF16	chr4	17795655	17815757
DCAF16_chr4_17795655_17815757	0/0	c0006	651	1	0	0	1	0	0	copy fasta	DCAF16	chr4	17795655	17815757
DCAF16_chr4_17795655_17815757	0/0	c0007	651	1	0	0	1	0	0	copy fasta	DCAF16	chr4	17795655	17815757
DCAF17_chr2_171429226_171490052	1/1	c0001	1563	209	47	42	89	11	18	copy fasta	DCAF17	chr2	171429226	171490052
DCAF17_chr2_171429226_171490052	0/0	c0002	1563	93	14	15	53	1	10	copy fasta	DCAF17	chr2	171429226	171490052
DCAF17_chr2_171429226_171490052	0/0	c0003	1563	20	5	1	11	0	3	copy fasta	DCAF17	chr2	171429226	171490052
DCAF17_chr2_171429226_171490052	0/0	c0004	1563	14	14	0	0	0	0	copy fasta	DCAF17	chr2	171429226	171490052
DCAF17_chr2_171429226_171490052	0/0	c0005	1563	13	7	1	5	0	0	copy fasta	DCAF17	chr2	171429226	171490052
DCAF17_chr2_171429226_171490052	0/0	c0006	1563	6	0	0	5	0	1	copy fasta	DCAF17	chr2	171429226	171490052
DCAF17_chr2_171429226_171490052	0/0	c0007	1563	1	1	0	0	0	0	copy fasta	DCAF17	chr2	171429226	171490052
DCAF17_chr2_171429226_171490052	0/0	c0008	1563	1	1	0	0	0	0	copy fasta	DCAF17	chr2	171429226	171490052