JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
DCAF17_chr2_171429226_171490052	0/0	c0009	1563	1	0	0	1	0	0	copy fasta	DCAF17	chr2	171429226	171490052
DCAF17_chr2_171429226_171490052	0/0	c0010	1563	1	1	0	0	0	0	copy fasta	DCAF17	chr2	171429226	171490052
DCAF17_chr2_171429226_171490052	0/0	c0011	1563	1	0	1	0	0	0	copy fasta	DCAF17	chr2	171429226	171490052
DCAF1_chr3_51392842_51505015	1/1	c0001	4524	260	53	47	127	6	25	copy fasta	DCAF1	chr3	51392842	51505015
DCAF1_chr3_51392842_51505015	0/0	c0002	4524	4	4	0	0	0	0	copy fasta	DCAF1	chr3	51392842	51505015
DCAF1_chr3_51392842_51505015	0/0	c0003	4524	2	0	0	2	0	0	copy fasta	DCAF1	chr3	51392842	51505015
DCAF1_chr3_51392842_51505015	0/0	c0004	4524	2	0	2	0	0	0	copy fasta	DCAF1	chr3	51392842	51505015
DCAF1_chr3_51392842_51505015	0/0	c0005	4524	1	0	0	1	0	0	copy fasta	DCAF1	chr3	51392842	51505015
DCAF1_chr3_51392842_51505015	0/0	c0006	4524	1	1	0	0	0	0	copy fasta	DCAF1	chr3	51392842	51505015
DCAF1_chr3_51392842_51505015	0/0	c0007	4524	1	0	0	0	0	1	copy fasta	DCAF1	chr3	51392842	51505015
DCAF1_chr3_51392842_51505015	0/0	c0008	4524	1	0	1	0	0	0	copy fasta	DCAF1	chr3	51392842	51505015
DCAF1_chr3_51392842_51505015	0/0	c0009	4524	1	0	0	1	0	0	copy fasta	DCAF1	chr3	51392842	51505015
DCAF1_chr3_51392842_51505015	0/0	c0010	4524	1	0	0	1	0	0	copy fasta	DCAF1	chr3	51392842	51505015
DCAF4L1_chr4_41976756_41991465	0/1	c0001	1191	184	15	43	87	8	30	copy fasta	DCAF4L1	chr4	41976756	41991465
DCAF4L1_chr4_41976756_41991465	1/0	c0002	1191	124	83	19	9	2	10	copy fasta	DCAF4L1	chr4	41976756	41991465
DCAF4L1_chr4_41976756_41991465	0/0	c0003	1191	5	0	0	5	0	0	copy fasta	DCAF4L1	chr4	41976756	41991465
DCAF4L1_chr4_41976756_41991465	0/0	c0004	1191	1	0	0	1	0	0	copy fasta	DCAF4L1	chr4	41976756	41991465
DCAF4L2_chr8_87865747_87879015	1/1	c0001	1188	415	80	72	204	16	41	copy fasta	DCAF4L2	chr8	87865747	87879015
DCAF4L2_chr8_87865747_87879015	0/0	c0002	1188	5	5	0	0	0	0	copy fasta	DCAF4L2	chr8	87865747	87879015
DCAF4L2_chr8_87865747_87879015	0/0	c0003	1188	4	4	0	0	0	0	copy fasta	DCAF4L2	chr8	87865747	87879015
DCAF4L2_chr8_87865747_87879015	0/0	c0004	1188	2	0	0	2	0	0	copy fasta	DCAF4L2	chr8	87865747	87879015
DCAF4L2_chr8_87865747_87879015	0/0	c0005	1188	1	0	0	0	0	1	copy fasta	DCAF4L2	chr8	87865747	87879015
DCAF4L2_chr8_87865747_87879015	0/0	c0006	1188	1	1	0	0	0	0	copy fasta	DCAF4L2	chr8	87865747	87879015
DCAF4L2_chr8_87865747_87879015	0/0	c0007	1188	1	1	0	0	0	0	copy fasta	DCAF4L2	chr8	87865747	87879015
DCAF4L2_chr8_87865747_87879015	0/0	c0008	1188	1	1	0	0	0	0	copy fasta	DCAF4L2	chr8	87865747	87879015
DCAF4_chr14_72921464_72964703	1/0	c0001	1488	193	49	43	80	3	17	copy fasta	DCAF4	chr14	72921464	72964703
DCAF4_chr14_72921464_72964703	0/0	c0002	1488	69	16	12	28	4	9	copy fasta	DCAF4	chr14	72921464	72964703
DCAF4_chr14_72921464_72964703	0/0	c0003	1488	59	8	4	37	1	9	copy fasta	DCAF4	chr14	72921464	72964703
DCAF4_chr14_72921464_72964703	0/0	c0004	1488	44	4	7	31	0	2	copy fasta	DCAF4	chr14	72921464	72964703
DCAF4_chr14_72921464_72964703	0/0	c0005	1488	6	0	0	6	0	0	copy fasta	DCAF4	chr14	72921464	72964703
DCAF4_chr14_72921464_72964703	0/0	c0006	1488	6	0	2	2	1	1	copy fasta	DCAF4	chr14	72921464	72964703
DCAF4_chr14_72921464_72964703	0/0	c0007	1488	5	5	0	0	0	0	copy fasta	DCAF4	chr14	72921464	72964703
DCAF4_chr14_72921464_72964703	0/0	c0008	1488	2	2	0	0	0	0	copy fasta	DCAF4	chr14	72921464	72964703
DCAF4_chr14_72921464_72964703	0/0	c0009	1488	2	0	0	0	1	1	copy fasta	DCAF4	chr14	72921464	72964703
DCAF4_chr14_72921464_72964703	0/0	c0010	1488	1	1	0	0	0	0	copy fasta	DCAF4	chr14	72921464	72964703
DCAF4_chr14_72921464_72964703	0/0	c0011	1488	1	1	0	0	0	0	copy fasta	DCAF4	chr14	72921464	72964703
DCAF4_chr14_72921464_72964703	0/1	c0012	1488	1	0	0	0	0	0	copy fasta	DCAF4	chr14	72921464	72964703
DCAF4_chr14_72921464_72964703	0/0	c0013	1488	1	1	0	0	0	0	copy fasta	DCAF4	chr14	72921464	72964703
DCAF4_chr14_72921464_72964703	0/0	c0014	1488	1	0	0	1	0	0	copy fasta	DCAF4	chr14	72921464	72964703
DCAF4_chr14_72921464_72964703	0/0	c0015	1488	1	0	0	1	0	0	copy fasta	DCAF4	chr14	72921464	72964703
DCAF4_chr14_72921464_72964703	0/0	c0016	1488	1	1	0	0	0	0	copy fasta	DCAF4	chr14	72921464	72964703
DCAF4_chr14_72921464_72964703	0/0	c0017	1488	1	0	0	0	0	1	copy fasta	DCAF4	chr14	72921464	72964703
DCAF4_chr14_72921464_72964703	0/0	c0018	1488	1	1	0	0	0	0	copy fasta	DCAF4	chr14	72921464	72964703
DCAF4_chr14_72921464_72964703	0/0	c0019	1488	1	1	0	0	0	0	copy fasta	DCAF4	chr14	72921464	72964703
DCAF5_chr14_69045881_69158119	1/1	c0001	2829	188	64	42	38	9	33	copy fasta	DCAF5	chr14	69045881	69158119
DCAF5_chr14_69045881_69158119	0/0	c0002	2829	25	4	11	0	5	5	copy fasta	DCAF5	chr14	69045881	69158119
DCAF5_chr14_69045881_69158119	0/0	c0003	2829	22	21	1	0	0	0	copy fasta	DCAF5	chr14	69045881	69158119
DCAF5_chr14_69045881_69158119	0/0	c0004	2829	3	0	0	3	0	0	copy fasta	DCAF5	chr14	69045881	69158119
DCAF5_chr14_69045881_69158119	0/0	c0005	2829	1	1	0	0	0	0	copy fasta	DCAF5	chr14	69045881	69158119
DCAF5_chr14_69045881_69158119	0/0	c0006	2829	1	0	1	0	0	0	copy fasta	DCAF5	chr14	69045881	69158119