JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
DCAF5_chr14_69045881_69158119	0/0	c0007	2829	1	1	0	0	0	0	copy fasta	DCAF5	chr14	69045881	69158119
DCAF5_chr14_69045881_69158119	0/0	c0008	2829	1	0	0	1	0	0	copy fasta	DCAF5	chr14	69045881	69158119
DCAF5_chr14_69045881_69158119	0/0	c0009	2829	1	0	1	0	0	0	copy fasta	DCAF5	chr14	69045881	69158119
DCAF5_chr14_69045881_69158119	0/0	c0010	2829	1	1	0	0	0	0	copy fasta	DCAF5	chr14	69045881	69158119
DCAF6_chr1_167931683_168080836	1/1	c0001	2856	140	70	17	40	5	6	copy fasta	DCAF6	chr1	167931683	168080836
DCAF6_chr1_167931683_168080836	0/0	c0002	2856	55	5	18	25	2	5	copy fasta	DCAF6	chr1	167931683	168080836
DCAF6_chr1_167931683_168080836	0/0	c0003	2856	41	4	8	21	3	5	copy fasta	DCAF6	chr1	167931683	168080836
DCAF6_chr1_167931683_168080836	0/0	c0004	2856	14	0	1	10	0	3	copy fasta	DCAF6	chr1	167931683	168080836
DCAF6_chr1_167931683_168080836	0/0	c0005	2856	9	9	0	0	0	0	copy fasta	DCAF6	chr1	167931683	168080836
DCAF6_chr1_167931683_168080836	0/0	c0006	2856	5	0	3	0	1	1	copy fasta	DCAF6	chr1	167931683	168080836
DCAF6_chr1_167931683_168080836	0/0	c0007	2856	1	0	1	0	0	0	copy fasta	DCAF6	chr1	167931683	168080836
DCAF6_chr1_167931683_168080836	0/0	c0008	2856	1	0	0	0	1	0	copy fasta	DCAF6	chr1	167931683	168080836
DCAF7_chr17_63545477_63599266	1/1	c0001	1029	246	79	42	77	14	32	copy fasta	DCAF7	chr17	63545477	63599266
DCAF7_chr17_63545477_63599266	0/0	c0002	1029	8	7	1	0	0	0	copy fasta	DCAF7	chr17	63545477	63599266
DCAF7_chr17_63545477_63599266	0/0	c0003	1029	7	0	5	2	0	0	copy fasta	DCAF7	chr17	63545477	63599266
DCAF7_chr17_63545477_63599266	0/0	c0004	1029	1	0	0	1	0	0	copy fasta	DCAF7	chr17	63545477	63599266
DCAF8L1_chrX_27972992_27986449	1/0	c0001	1803	250	68	48	95	11	27	copy fasta	DCAF8L1	chrX	27972992	27986449
DCAF8L1_chrX_27972992_27986449	0/0	c0002	1803	26	5	4	12	2	3	copy fasta	DCAF8L1	chrX	27972992	27986449
DCAF8L1_chrX_27972992_27986449	0/0	c0003	1803	2	1	1	0	0	0	copy fasta	DCAF8L1	chrX	27972992	27986449
DCAF8L1_chrX_27972992_27986449	0/0	c0004	1803	1	0	0	1	0	0	copy fasta	DCAF8L1	chrX	27972992	27986449
DCAF8L1_chrX_27972992_27986449	0/0	c0005	1803	1	0	0	0	0	1	copy fasta	DCAF8L1	chrX	27972992	27986449
DCAF8L1_chrX_27972992_27986449	0/0	c0006	1803	1	0	0	1	0	0	copy fasta	DCAF8L1	chrX	27972992	27986449
DCAF8L1_chrX_27972992_27986449	0/0	c0007	1803	1	1	0	0	0	0	copy fasta	DCAF8L1	chrX	27972992	27986449
DCAF8L1_chrX_27972992_27986449	0/1	c0008	1803	1	0	0	0	0	0	copy fasta	DCAF8L1	chrX	27972992	27986449
DCAF8L1_chrX_27972992_27986449	0/0	c0009	1803	1	0	0	0	0	1	copy fasta	DCAF8L1	chrX	27972992	27986449
DCAF8L1_chrX_27972992_27986449	0/0	c0010	1803	1	0	0	1	0	0	copy fasta	DCAF8L1	chrX	27972992	27986449
DCAF8L1_chrX_27972992_27986449	0/0	c0011	1803	1	1	0	0	0	0	copy fasta	DCAF8L1	chrX	27972992	27986449
DCAF8L1_chrX_27972992_27986449	0/0	c0012	1803	1	1	0	0	0	0	copy fasta	DCAF8L1	chrX	27972992	27986449
DCAF8L1_chrX_27972992_27986449	0/0	c0013	1803	1	1	0	0	0	0	copy fasta	DCAF8L1	chrX	27972992	27986449
DCAF8L1_chrX_27972992_27986449	0/0	c0014	1803	1	0	1	0	0	0	copy fasta	DCAF8L1	chrX	27972992	27986449
DCAF8L1_chrX_27972992_27986449	0/0	c0015	1803	1	0	1	0	0	0	copy fasta	DCAF8L1	chrX	27972992	27986449
DCAF8L2_chrX_27585344_27754942	1/0	c0001	1896	53	5	25	11	5	6	copy fasta	DCAF8L2	chrX	27585344	27754942
DCAF8L2_chrX_27585344_27754942	0/0	c0002	1887	50	12	6	29	0	3	copy fasta	DCAF8L2	chrX	27585344	27754942
DCAF8L2_chrX_27585344_27754942	0/0	c0003	1893	35	4	4	26	0	1	copy fasta	DCAF8L2	chrX	27585344	27754942
DCAF8L2_chrX_27585344_27754942	0/0	c0004	1890	25	8	2	11	1	3	copy fasta	DCAF8L2	chrX	27585344	27754942
DCAF8L2_chrX_27585344_27754942	0/0	c0005	1887	20	2	5	10	2	1	copy fasta	DCAF8L2	chrX	27585344	27754942
DCAF8L2_chrX_27585344_27754942	0/1	c0006	1899	17	3	2	6	1	4	copy fasta	DCAF8L2	chrX	27585344	27754942
DCAF8L2_chrX_27585344_27754942	0/0	c0007	1884	12	5	1	6	0	0	copy fasta	DCAF8L2	chrX	27585344	27754942
DCAF8L2_chrX_27585344_27754942	0/0	c0008	1905	7	7	0	0	0	0	copy fasta	DCAF8L2	chrX	27585344	27754942
DCAF8L2_chrX_27585344_27754942	0/0	c0009	1890	4	1	2	0	0	1	copy fasta	DCAF8L2	chrX	27585344	27754942
DCAF8L2_chrX_27585344_27754942	0/0	c0010	1896	4	0	3	0	0	1	copy fasta	DCAF8L2	chrX	27585344	27754942
DCAF8L2_chrX_27585344_27754942	0/0	c0011	1896	4	0	0	4	0	0	copy fasta	DCAF8L2	chrX	27585344	27754942
DCAF8L2_chrX_27585344_27754942	0/0	c0012	1893	3	3	0	0	0	0	copy fasta	DCAF8L2	chrX	27585344	27754942
DCAF8L2_chrX_27585344_27754942	0/0	c0013	1902	3	1	1	1	0	0	copy fasta	DCAF8L2	chrX	27585344	27754942
DCAF8L2_chrX_27585344_27754942	0/0	c0014	1899	2	2	0	0	0	0	copy fasta	DCAF8L2	chrX	27585344	27754942
DCAF8L2_chrX_27585344_27754942	0/0	c0015	1893	2	0	2	0	0	0	copy fasta	DCAF8L2	chrX	27585344	27754942
DCAF8L2_chrX_27585344_27754942	0/0	c0016	1905	2	2	0	0	0	0	copy fasta	DCAF8L2	chrX	27585344	27754942
DCAF8L2_chrX_27585344_27754942	0/0	c0017	1896	2	2	0	0	0	0	copy fasta	DCAF8L2	chrX	27585344	27754942
DCAF8L2_chrX_27585344_27754942	0/0	c0018	1899	2	2	0	0	0	0	copy fasta	DCAF8L2	chrX	27585344	27754942
DCAF8L2_chrX_27585344_27754942	0/0	c0019	1899	1	0	0	1	0	0	copy fasta	DCAF8L2	chrX	27585344	27754942