JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
DCP1B_chr12_1941053_2009457	0/0	c0013	1854	1	1	0	0	0	0	copy fasta	DCP1B	chr12	1941053	2009457
DCP1B_chr12_1941053_2009457	0/0	c0014	1854	1	0	0	1	0	0	copy fasta	DCP1B	chr12	1941053	2009457
DCP1B_chr12_1941053_2009457	0/0	c0015	1854	1	0	0	0	0	1	copy fasta	DCP1B	chr12	1941053	2009457
DCP1B_chr12_1941053_2009457	0/0	c0016	1857	1	0	1	0	0	0	copy fasta	DCP1B	chr12	1941053	2009457
DCP1B_chr12_1941053_2009457	0/0	c0017	1857	1	1	0	0	0	0	copy fasta	DCP1B	chr12	1941053	2009457
DCP1B_chr12_1941053_2009457	0/0	c0018	1854	1	0	0	0	1	0	copy fasta	DCP1B	chr12	1941053	2009457
DCP1B_chr12_1941053_2009457	0/0	c0019	1857	1	0	1	0	0	0	copy fasta	DCP1B	chr12	1941053	2009457
DCP2_chr5_112971798_113027195	0/1	c0001	1263	252	67	38	107	11	28	copy fasta	DCP2	chr5	112971798	113027195
DCP2_chr5_112971798_113027195	1/0	c0002	1263	86	13	20	44	3	5	copy fasta	DCP2	chr5	112971798	113027195
DCP2_chr5_112971798_113027195	0/0	c0003	1263	9	9	0	0	0	0	copy fasta	DCP2	chr5	112971798	113027195
DCP2_chr5_112971798_113027195	0/0	c0004	1263	6	4	1	1	0	0	copy fasta	DCP2	chr5	112971798	113027195
DCP2_chr5_112971798_113027195	0/0	c0005	1263	3	0	0	3	0	0	copy fasta	DCP2	chr5	112971798	113027195
DCP2_chr5_112971798_113027195	0/0	c0006	1263	3	0	0	3	0	0	copy fasta	DCP2	chr5	112971798	113027195
DCP2_chr5_112971798_113027195	0/0	c0007	1263	1	1	0	0	0	0	copy fasta	DCP2	chr5	112971798	113027195
DCP2_chr5_112971798_113027195	0/0	c0008	1263	1	1	0	0	0	0	copy fasta	DCP2	chr5	112971798	113027195
DCP2_chr5_112971798_113027195	0/0	c0009	1263	1	0	0	0	0	1	copy fasta	DCP2	chr5	112971798	113027195
DCP2_chr5_112971798_113027195	0/0	c0010	1263	1	1	0	0	0	0	copy fasta	DCP2	chr5	112971798	113027195
DCP2_chr5_112971798_113027195	0/0	c0011	1263	1	0	1	0	0	0	copy fasta	DCP2	chr5	112971798	113027195
DCPS_chr11_126299060_126355005	0/1	c0001	1014	131	60	17	36	4	13	copy fasta	DCPS	chr11	126299060	126355005
DCPS_chr11_126299060_126355005	0/0	c0002	1014	103	6	25	53	4	15	copy fasta	DCPS	chr11	126299060	126355005
DCPS_chr11_126299060_126355005	0/0	c0003	1014	43	19	10	7	2	5	copy fasta	DCPS	chr11	126299060	126355005
DCPS_chr11_126299060_126355005	0/0	c0004	1014	29	0	6	23	0	0	copy fasta	DCPS	chr11	126299060	126355005
DCPS_chr11_126299060_126355005	1/0	c0005	1014	18	0	12	0	3	2	copy fasta	DCPS	chr11	126299060	126355005
DCPS_chr11_126299060_126355005	0/0	c0006	1014	5	0	0	0	0	5	copy fasta	DCPS	chr11	126299060	126355005
DCPS_chr11_126299060_126355005	0/0	c0007	1014	3	0	0	2	0	1	copy fasta	DCPS	chr11	126299060	126355005
DCPS_chr11_126299060_126355005	0/0	c0008	1014	3	0	0	3	0	0	copy fasta	DCPS	chr11	126299060	126355005
DCPS_chr11_126299060_126355005	0/0	c0009	1014	2	2	0	0	0	0	copy fasta	DCPS	chr11	126299060	126355005
DCPS_chr11_126299060_126355005	0/0	c0010	1014	1	1	0	0	0	0	copy fasta	DCPS	chr11	126299060	126355005
DCPS_chr11_126299060_126355005	0/0	c0011	1014	1	0	0	1	0	0	copy fasta	DCPS	chr11	126299060	126355005
DCPS_chr11_126299060_126355005	0/0	c0012	1014	1	0	0	0	0	1	copy fasta	DCPS	chr11	126299060	126355005
DCPS_chr11_126299060_126355005	0/0	c0013	1014	1	0	0	0	1	0	copy fasta	DCPS	chr11	126299060	126355005
DCPS_chr11_126299060_126355005	0/0	c0014	1014	1	0	0	1	0	0	copy fasta	DCPS	chr11	126299060	126355005
DCST1_chr1_155028824_155055930	0/0	c0001	2121	167	43	41	54	8	21	copy fasta	DCST1	chr1	155028824	155055930
DCST1_chr1_155028824_155055930	1/1	c0002	2121	100	32	24	12	10	20	copy fasta	DCST1	chr1	155028824	155055930
DCST1_chr1_155028824_155055930	0/0	c0003	2121	8	7	1	0	0	0	copy fasta	DCST1	chr1	155028824	155055930
DCST1_chr1_155028824_155055930	0/0	c0004	2121	8	8	0	0	0	0	copy fasta	DCST1	chr1	155028824	155055930
DCST1_chr1_155028824_155055930	0/0	c0005	2121	3	2	0	0	0	1	copy fasta	DCST1	chr1	155028824	155055930
DCST1_chr1_155028824_155055930	0/0	c0006	2121	3	3	0	0	0	0	copy fasta	DCST1	chr1	155028824	155055930
DCST1_chr1_155028824_155055930	0/0	c0007	2121	2	0	0	2	0	0	copy fasta	DCST1	chr1	155028824	155055930
DCST1_chr1_155028824_155055930	0/0	c0008	2121	2	0	0	0	0	2	copy fasta	DCST1	chr1	155028824	155055930
DCST1_chr1_155028824_155055930	0/0	c0009	2121	2	0	0	2	0	0	copy fasta	DCST1	chr1	155028824	155055930
DCST1_chr1_155028824_155055930	0/0	c0010	2121	1	1	0	0	0	0	copy fasta	DCST1	chr1	155028824	155055930
DCST1_chr1_155028824_155055930	0/0	c0011	2121	1	0	0	1	0	0	copy fasta	DCST1	chr1	155028824	155055930
DCST1_chr1_155028824_155055930	0/0	c0012	2121	1	0	0	1	0	0	copy fasta	DCST1	chr1	155028824	155055930
DCST1_chr1_155028824_155055930	0/0	c0013	2121	1	0	0	0	0	1	copy fasta	DCST1	chr1	155028824	155055930
DCST1_chr1_155028824_155055930	0/0	c0014	2121	1	0	0	1	0	0	copy fasta	DCST1	chr1	155028824	155055930
DCST1_chr1_155028824_155055930	0/0	c0015	2121	1	0	0	1	0	0	copy fasta	DCST1	chr1	155028824	155055930
DCST1_chr1_155028824_155055930	0/0	c0016	2121	1	0	0	1	0	0	copy fasta	DCST1	chr1	155028824	155055930
DCST1_chr1_155028824_155055930	0/0	c0017	2121	1	1	0	0	0	0	copy fasta	DCST1	chr1	155028824	155055930
DCST1_chr1_155028824_155055930	0/0	c0018	2121	1	1	0	0	0	0	copy fasta	DCST1	chr1	155028824	155055930