JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
DEUP1_chr11_93325742_93443470	0/0	c0014	1815	1	1	0	0	0	0	copy fasta	DEUP1	chr11	93325742	93443470
DEUP1_chr11_93325742_93443470	0/0	c0015	1815	1	1	0	0	0	0	copy fasta	DEUP1	chr11	93325742	93443470
DEUP1_chr11_93325742_93443470	0/0	c0016	1815	1	0	1	0	0	0	copy fasta	DEUP1	chr11	93325742	93443470
DEUP1_chr11_93325742_93443470	0/0	c0017	1815	1	0	0	1	0	0	copy fasta	DEUP1	chr11	93325742	93443470
DEXI_chr16_10923891_10947468	1/1	c0001	288	454	94	74	220	18	46	copy fasta	DEXI	chr16	10923891	10947468
DFFA_chr1_10451522_10477529	1/1	c0001	996	218	40	27	109	13	27	copy fasta	DFFA	chr1	10451522	10477529
DFFA_chr1_10451522_10477529	0/0	c0002	997	175	35	49	72	1	18	copy fasta	DFFA	chr1	10451522	10477529
DFFA_chr1_10451522_10477529	0/0	c0003	996	11	4	1	5	0	1	copy fasta	DFFA	chr1	10451522	10477529
DFFA_chr1_10451522_10477529	0/0	c0004	997	8	3	0	4	0	1	copy fasta	DFFA	chr1	10451522	10477529
DFFA_chr1_10451522_10477529	0/0	c0005	996	5	0	0	5	0	0	copy fasta	DFFA	chr1	10451522	10477529
DFFA_chr1_10451522_10477529	0/0	c0006	997	3	0	0	3	0	0	copy fasta	DFFA	chr1	10451522	10477529
DFFA_chr1_10451522_10477529	0/0	c0007	997	3	3	0	0	0	0	copy fasta	DFFA	chr1	10451522	10477529
DFFA_chr1_10451522_10477529	0/0	c0008	997	3	3	0	0	0	0	copy fasta	DFFA	chr1	10451522	10477529
DFFA_chr1_10451522_10477529	0/0	c0009	996	3	3	0	0	0	0	copy fasta	DFFA	chr1	10451522	10477529
DFFA_chr1_10451522_10477529	0/0	c0010	996	2	1	1	0	0	0	copy fasta	DFFA	chr1	10451522	10477529
DFFA_chr1_10451522_10477529	0/0	c0011	997	1	1	0	0	0	0	copy fasta	DFFA	chr1	10451522	10477529
DFFA_chr1_10451522_10477529	0/0	c0012	997	1	0	0	1	0	0	copy fasta	DFFA	chr1	10451522	10477529
DFFA_chr1_10451522_10477529	0/0	c0013	997	1	1	0	0	0	0	copy fasta	DFFA	chr1	10451522	10477529
DFFA_chr1_10451522_10477529	0/0	c0014	996	1	1	0	0	0	0	copy fasta	DFFA	chr1	10451522	10477529
DFFA_chr1_10451522_10477529	0/0	c0015	996	1	0	0	0	0	1	copy fasta	DFFA	chr1	10451522	10477529
DFFA_chr1_10451522_10477529	0/0	c0016	996	1	0	0	1	0	0	copy fasta	DFFA	chr1	10451522	10477529
DFFA_chr1_10451522_10477529	0/0	c0017	996	1	1	0	0	0	0	copy fasta	DFFA	chr1	10451522	10477529
DFFB_chr1_3852476_3890429	1/1	c0001	1017	199	51	49	65	8	24	copy fasta	DFFB	chr1	3852476	3890429
DFFB_chr1_3852476_3890429	0/0	c0002	1017	79	19	9	47	1	3	copy fasta	DFFB	chr1	3852476	3890429
DFFB_chr1_3852476_3890429	0/0	c0003	1017	51	10	16	12	2	11	copy fasta	DFFB	chr1	3852476	3890429
DFFB_chr1_3852476_3890429	0/0	c0004	1017	48	3	7	33	2	3	copy fasta	DFFB	chr1	3852476	3890429
DFFB_chr1_3852476_3890429	0/0	c0005	1017	9	4	1	1	1	2	copy fasta	DFFB	chr1	3852476	3890429
DFFB_chr1_3852476_3890429	0/0	c0006	1017	5	1	0	4	0	0	copy fasta	DFFB	chr1	3852476	3890429
DFFB_chr1_3852476_3890429	0/0	c0007	1017	3	0	0	3	0	0	copy fasta	DFFB	chr1	3852476	3890429
DFFB_chr1_3852476_3890429	0/0	c0008	1017	2	2	0	0	0	0	copy fasta	DFFB	chr1	3852476	3890429
DFFB_chr1_3852476_3890429	0/0	c0009	1017	2	0	0	0	0	2	copy fasta	DFFB	chr1	3852476	3890429
DFFB_chr1_3852476_3890429	0/0	c0010	1017	1	1	0	0	0	0	copy fasta	DFFB	chr1	3852476	3890429
DFFB_chr1_3852476_3890429	0/0	c0011	1017	1	1	0	0	0	0	copy fasta	DFFB	chr1	3852476	3890429
DFFB_chr1_3852476_3890429	0/0	c0012	1017	1	0	0	0	0	1	copy fasta	DFFB	chr1	3852476	3890429
DFFB_chr1_3852476_3890429	0/0	c0013	1017	1	0	0	1	0	0	copy fasta	DFFB	chr1	3852476	3890429
DFFB_chr1_3852476_3890429	0/0	c0014	1017	1	0	0	1	0	0	copy fasta	DFFB	chr1	3852476	3890429
DFFB_chr1_3852476_3890429	0/0	c0015	1017	1	0	0	1	0	0	copy fasta	DFFB	chr1	3852476	3890429
DGAT1_chr8_144309584_144331852	1/1	c0001	1467	351	79	69	143	13	45	copy fasta	DGAT1	chr8	144309584	144331852
DGAT1_chr8_144309584_144331852	0/0	c0002	1467	5	0	2	0	3	0	copy fasta	DGAT1	chr8	144309584	144331852
DGAT1_chr8_144309584_144331852	0/0	c0003	1467	2	0	0	2	0	0	copy fasta	DGAT1	chr8	144309584	144331852
DGAT1_chr8_144309584_144331852	0/0	c0004	1467	2	2	0	0	0	0	copy fasta	DGAT1	chr8	144309584	144331852
DGAT1_chr8_144309584_144331852	0/0	c0005	1467	1	0	1	0	0	0	copy fasta	DGAT1	chr8	144309584	144331852
DGAT1_chr8_144309584_144331852	0/0	c0006	1467	1	1	0	0	0	0	copy fasta	DGAT1	chr8	144309584	144331852
DGAT1_chr8_144309584_144331852	0/0	c0007	1467	1	0	0	1	0	0	copy fasta	DGAT1	chr8	144309584	144331852
DGAT1_chr8_144309584_144331852	0/0	c0008	1467	1	1	0	0	0	0	copy fasta	DGAT1	chr8	144309584	144331852
DGAT1_chr8_144309584_144331852	0/0	c0009	1467	1	0	0	0	0	1	copy fasta	DGAT1	chr8	144309584	144331852
DGAT1_chr8_144309584_144331852	0/0	c0010	1467	1	0	0	1	0	0	copy fasta	DGAT1	chr8	144309584	144331852
DGAT1_chr8_144309584_144331852	0/0	c0011	1467	1	1	0	0	0	0	copy fasta	DGAT1	chr8	144309584	144331852
DGAT1_chr8_144309584_144331852	0/0	c0012	1467	1	0	0	0	0	1	copy fasta	DGAT1	chr8	144309584	144331852
DGAT1_chr8_144309584_144331852	0/0	c0013	1467	1	0	0	0	0	1	copy fasta	DGAT1	chr8	144309584	144331852