JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
DGAT1_chr8_144309584_144331852	0/0	c0014	1467	1	0	0	1	0	0	copy fasta	DGAT1	chr8	144309584	144331852
DGAT2L6_chrX_70172483_70210704	1/1	c0001	1014	271	78	47	103	11	30	copy fasta	DGAT2L6	chrX	70172483	70210704
DGAT2L6_chrX_70172483_70210704	0/0	c0002	1014	2	0	0	2	0	0	copy fasta	DGAT2L6	chrX	70172483	70210704
DGAT2L6_chrX_70172483_70210704	0/0	c0003	1014	1	0	0	1	0	0	copy fasta	DGAT2L6	chrX	70172483	70210704
DGAT2_chr11_75763778_75806534	1/1	c0001	1167	295	70	45	138	7	33	copy fasta	DGAT2	chr11	75763778	75806534
DGAT2_chr11_75763778_75806534	0/0	c0002	1167	9	8	0	0	0	1	copy fasta	DGAT2	chr11	75763778	75806534
DGAT2_chr11_75763778_75806534	0/0	c0003	1167	8	7	1	0	0	0	copy fasta	DGAT2	chr11	75763778	75806534
DGAT2_chr11_75763778_75806534	0/0	c0004	1167	3	0	0	3	0	0	copy fasta	DGAT2	chr11	75763778	75806534
DGAT2_chr11_75763778_75806534	0/0	c0005	1167	3	0	0	3	0	0	copy fasta	DGAT2	chr11	75763778	75806534
DGAT2_chr11_75763778_75806534	0/0	c0006	1167	1	0	0	1	0	0	copy fasta	DGAT2	chr11	75763778	75806534
DGAT2_chr11_75763778_75806534	0/0	c0007	1167	1	0	0	1	0	0	copy fasta	DGAT2	chr11	75763778	75806534
DGAT2_chr11_75763778_75806534	0/0	c0008	1167	1	0	0	0	1	0	copy fasta	DGAT2	chr11	75763778	75806534
DGAT2_chr11_75763778_75806534	0/0	c0009	1167	1	0	0	0	0	1	copy fasta	DGAT2	chr11	75763778	75806534
DGAT2_chr11_75763778_75806534	0/0	c0010	1167	1	0	0	0	0	1	copy fasta	DGAT2	chr11	75763778	75806534
DGAT2_chr11_75763778_75806534	0/0	c0011	1167	1	1	0	0	0	0	copy fasta	DGAT2	chr11	75763778	75806534
DGCR2_chr22_19031286_19127412	1/0	c0001	1653	151	37	28	68	5	12	copy fasta	DGCR2	chr22	19031286	19127412
DGCR2_chr22_19031286_19127412	0/1	c0002	1653	147	44	28	54	5	15	copy fasta	DGCR2	chr22	19031286	19127412
DGCR2_chr22_19031286_19127412	0/0	c0003	1653	30	0	8	17	0	5	copy fasta	DGCR2	chr22	19031286	19127412
DGCR2_chr22_19031286_19127412	0/0	c0004	1653	7	0	3	0	0	4	copy fasta	DGCR2	chr22	19031286	19127412
DGCR2_chr22_19031286_19127412	0/0	c0005	1653	6	5	1	0	0	0	copy fasta	DGCR2	chr22	19031286	19127412
DGCR2_chr22_19031286_19127412	0/0	c0006	1653	1	0	0	1	0	0	copy fasta	DGCR2	chr22	19031286	19127412
DGCR2_chr22_19031286_19127412	0/0	c0007	1653	1	0	0	1	0	0	copy fasta	DGCR2	chr22	19031286	19127412
DGCR2_chr22_19031286_19127412	0/0	c0008	1653	1	0	0	1	0	0	copy fasta	DGCR2	chr22	19031286	19127412
DGCR6L_chr22_20309238_20325060	1/0	c0001	663	270	78	41	118	8	24	copy fasta	DGCR6L	chr22	20309238	20325060
DGCR6L_chr22_20309238_20325060	0/1	c0002	663	87	12	22	38	4	10	copy fasta	DGCR6L	chr22	20309238	20325060
DGCR6L_chr22_20309238_20325060	0/0	c0003	663	30	0	9	19	0	2	copy fasta	DGCR6L	chr22	20309238	20325060
DGCR6L_chr22_20309238_20325060	0/0	c0004	663	2	0	0	2	0	0	copy fasta	DGCR6L	chr22	20309238	20325060
DGCR6L_chr22_20309238_20325060	0/0	c0005	663	1	0	0	1	0	0	copy fasta	DGCR6L	chr22	20309238	20325060
DGCR6L_chr22_20309238_20325060	0/0	c0006	663	1	1	0	0	0	0	copy fasta	DGCR6L	chr22	20309238	20325060
DGCR6L_chr22_20309238_20325060	0/0	c0007	663	1	1	0	0	0	0	copy fasta	DGCR6L	chr22	20309238	20325060
DGCR6_chr22_18901320_18917088	0/1	c0001	663	345	70	73	149	14	38	copy fasta	DGCR6	chr22	18901320	18917088
DGCR6_chr22_18901320_18917088	0/0	c0002	663	12	2	3	1	0	6	copy fasta	DGCR6	chr22	18901320	18917088
DGCR6_chr22_18901320_18917088	0/0	c0003	663	12	5	1	5	1	0	copy fasta	DGCR6	chr22	18901320	18917088
DGCR6_chr22_18901320_18917088	0/0	c0004	663	12	10	2	0	0	0	copy fasta	DGCR6	chr22	18901320	18917088
DGCR6_chr22_18901320_18917088	0/0	c0005	663	11	1	1	5	0	4	copy fasta	DGCR6	chr22	18901320	18917088
DGCR6_chr22_18901320_18917088	0/0	c0006	663	7	0	0	7	0	0	copy fasta	DGCR6	chr22	18901320	18917088
DGCR6_chr22_18901320_18917088	0/0	c0007	669	3	0	0	3	0	0	copy fasta	DGCR6	chr22	18901320	18917088
DGCR6_chr22_18901320_18917088	0/0	c0008	663	2	2	0	0	0	0	copy fasta	DGCR6	chr22	18901320	18917088
DGCR6_chr22_18901320_18917088	0/0	c0009	663	2	2	0	0	0	0	copy fasta	DGCR6	chr22	18901320	18917088
DGCR6_chr22_18901320_18917088	0/0	c0010	663	1	1	0	0	0	0	copy fasta	DGCR6	chr22	18901320	18917088
DGCR6_chr22_18901320_18917088	0/0	c0011	663	1	0	1	0	0	0	copy fasta	DGCR6	chr22	18901320	18917088
DGCR6_chr22_18901320_18917088	0/0	c0012	686	1	1	0	0	0	0	copy fasta	DGCR6	chr22	18901320	18917088
DGCR6_chr22_18901320_18917088	0/0	c0013	663	1	0	0	1	0	0	copy fasta	DGCR6	chr22	18901320	18917088
DGCR6_chr22_18901320_18917088	0/0	c0014	663	1	0	0	0	1	0	copy fasta	DGCR6	chr22	18901320	18917088
DGCR6_chr22_18901320_18917088	0/0	c0015	663	1	0	1	0	0	0	copy fasta	DGCR6	chr22	18901320	18917088
DGCR6_chr22_18901320_18917088	0/0	c0016	663	1	0	0	1	0	0	copy fasta	DGCR6	chr22	18901320	18917088
DGCR8_chr22_20075241_20116872	1/0	c0001	2322	376	89	55	172	17	42	copy fasta	DGCR8	chr22	20075241	20116872
DGCR8_chr22_20075241_20116872	0/0	c0002	2322	22	0	2	18	0	2	copy fasta	DGCR8	chr22	20075241	20116872
DGCR8_chr22_20075241_20116872	0/0	c0003	2322	4	0	3	0	1	0	copy fasta	DGCR8	chr22	20075241	20116872
DGCR8_chr22_20075241_20116872	0/0	c0004	2322	4	3	1	0	0	0	copy fasta	DGCR8	chr22	20075241	20116872