JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
DGCR8_chr22_20075241_20116872	0/0	c0005	2322	4	3	1	0	0	0	copy fasta	DGCR8	chr22	20075241	20116872
DGCR8_chr22_20075241_20116872	0/0	c0006	2322	1	0	0	1	0	0	copy fasta	DGCR8	chr22	20075241	20116872
DGCR8_chr22_20075241_20116872	0/0	c0007	2322	1	0	1	0	0	0	copy fasta	DGCR8	chr22	20075241	20116872
DGCR8_chr22_20075241_20116872	0/0	c0008	2322	1	0	0	1	0	0	copy fasta	DGCR8	chr22	20075241	20116872
DGCR8_chr22_20075241_20116872	0/0	c0009	2322	1	1	0	0	0	0	copy fasta	DGCR8	chr22	20075241	20116872
DGCR8_chr22_20075241_20116872	0/0	c0010	2344	1	0	0	1	0	0	copy fasta	DGCR8	chr22	20075241	20116872
DGCR8_chr22_20075241_20116872	0/0	c0011	2322	1	1	0	0	0	0	copy fasta	DGCR8	chr22	20075241	20116872
DGCR8_chr22_20075241_20116872	0/0	c0012	2322	1	0	1	0	0	0	copy fasta	DGCR8	chr22	20075241	20116872
DGCR8_chr22_20075241_20116872	0/0	c0013	2322	1	1	0	0	0	0	copy fasta	DGCR8	chr22	20075241	20116872
DGCR8_chr22_20075241_20116872	0/0	c0014	2322	1	0	0	1	0	0	copy fasta	DGCR8	chr22	20075241	20116872
DGKA_chr12_55926162_55959023	0/0	c0001	2208	228	33	48	106	10	31	copy fasta	DGKA	chr12	55926162	55959023
DGKA_chr12_55926162_55959023	1/1	c0002	2208	59	4	14	28	7	4	copy fasta	DGKA	chr12	55926162	55959023
DGKA_chr12_55926162_55959023	0/0	c0003	2208	30	28	2	0	0	0	copy fasta	DGKA	chr12	55926162	55959023
DGKA_chr12_55926162_55959023	0/0	c0004	2208	5	4	1	0	0	0	copy fasta	DGKA	chr12	55926162	55959023
DGKA_chr12_55926162_55959023	0/0	c0005	2208	3	3	0	0	0	0	copy fasta	DGKA	chr12	55926162	55959023
DGKA_chr12_55926162_55959023	0/0	c0006	2208	1	0	1	0	0	0	copy fasta	DGKA	chr12	55926162	55959023
DGKA_chr12_55926162_55959023	0/0	c0007	2208	1	0	0	0	1	0	copy fasta	DGKA	chr12	55926162	55959023
DGKA_chr12_55926162_55959023	0/0	c0008	2208	1	0	0	0	0	1	copy fasta	DGKA	chr12	55926162	55959023
DGKB_chr7_14140049_14907751	0/1	c0001	2412	40	4	6	24	1	4	copy fasta	DGKB	chr7	14140049	14907751
DGKB_chr7_14140049_14907751	1/0	c0002	2412	38	23	7	1	1	5	copy fasta	DGKB	chr7	14140049	14907751
DGKB_chr7_14140049_14907751	0/0	c0003	2412	28	21	5	2	0	0	copy fasta	DGKB	chr7	14140049	14907751
DGKB_chr7_14140049_14907751	0/0	c0004	2412	22	5	3	11	2	1	copy fasta	DGKB	chr7	14140049	14907751
DGKB_chr7_14140049_14907751	0/0	c0005	2412	3	2	0	1	0	0	copy fasta	DGKB	chr7	14140049	14907751
DGKB_chr7_14140049_14907751	0/0	c0006	2412	3	3	0	0	0	0	copy fasta	DGKB	chr7	14140049	14907751
DGKB_chr7_14140049_14907751	0/0	c0007	2412	2	0	0	2	0	0	copy fasta	DGKB	chr7	14140049	14907751
DGKB_chr7_14140049_14907751	0/0	c0008	2412	2	2	0	0	0	0	copy fasta	DGKB	chr7	14140049	14907751
DGKB_chr7_14140049_14907751	0/0	c0009	2412	2	2	0	0	0	0	copy fasta	DGKB	chr7	14140049	14907751
DGKB_chr7_14140049_14907751	0/0	c0010	2412	1	1	0	0	0	0	copy fasta	DGKB	chr7	14140049	14907751
DGKB_chr7_14140049_14907751	0/0	c0011	2412	1	0	0	1	0	0	copy fasta	DGKB	chr7	14140049	14907751
DGKB_chr7_14140049_14907751	0/0	c0012	2412	1	0	1	0	0	0	copy fasta	DGKB	chr7	14140049	14907751
DGKB_chr7_14140049_14907751	0/0	c0013	2412	1	1	0	0	0	0	copy fasta	DGKB	chr7	14140049	14907751
DGKB_chr7_14140049_14907751	0/0	c0014	2412	1	1	0	0	0	0	copy fasta	DGKB	chr7	14140049	14907751
DGKB_chr7_14140049_14907751	0/0	c0015	2412	1	1	0	0	0	0	copy fasta	DGKB	chr7	14140049	14907751
DGKB_chr7_14140049_14907751	0/0	c0016	2412	1	1	0	0	0	0	copy fasta	DGKB	chr7	14140049	14907751
DGKB_chr7_14140049_14907751	0/0	c0017	2412	1	1	0	0	0	0	copy fasta	DGKB	chr7	14140049	14907751
DGKD_chr2_233349494_233477098	1/1	c0001	3645	235	46	47	110	12	18	copy fasta	DGKD	chr2	233349494	233477098
DGKD_chr2_233349494_233477098	0/0	c0002	3645	41	13	10	9	0	9	copy fasta	DGKD	chr2	233349494	233477098
DGKD_chr2_233349494_233477098	0/0	c0003	3645	31	14	3	11	2	1	copy fasta	DGKD	chr2	233349494	233477098
DGKD_chr2_233349494_233477098	0/0	c0004	3645	18	15	1	2	0	0	copy fasta	DGKD	chr2	233349494	233477098
DGKD_chr2_233349494_233477098	0/0	c0005	3645	1	0	1	0	0	0	copy fasta	DGKD	chr2	233349494	233477098
DGKD_chr2_233349494_233477098	0/0	c0006	3645	1	0	1	0	0	0	copy fasta	DGKD	chr2	233349494	233477098
DGKD_chr2_233349494_233477098	0/0	c0007	3645	1	0	0	0	0	1	copy fasta	DGKD	chr2	233349494	233477098
DGKD_chr2_233349494_233477098	0/0	c0008	3645	1	0	0	0	0	1	copy fasta	DGKD	chr2	233349494	233477098
DGKD_chr2_233349494_233477098	0/0	c0009	3645	1	0	1	0	0	0	copy fasta	DGKD	chr2	233349494	233477098
DGKD_chr2_233349494_233477098	0/0	c0010	3645	1	0	0	1	0	0	copy fasta	DGKD	chr2	233349494	233477098
DGKD_chr2_233349494_233477098	0/0	c0011	3645	1	1	0	0	0	0	copy fasta	DGKD	chr2	233349494	233477098
DGKD_chr2_233349494_233477098	0/0	c0012	3645	1	1	0	0	0	0	copy fasta	DGKD	chr2	233349494	233477098
DGKD_chr2_233349494_233477098	0/0	c0013	3645	1	0	0	1	0	0	copy fasta	DGKD	chr2	233349494	233477098
DGKD_chr2_233349494_233477098	0/0	c0014	3645	1	1	0	0	0	0	copy fasta	DGKD	chr2	233349494	233477098
DGKD_chr2_233349494_233477098	0/0	c0015	3645	1	1	0	0	0	0	copy fasta	DGKD	chr2	233349494	233477098