Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ADAT3_chr19_1900399_1918447	0/1	c0002	1104	97	25	19	43	1	8	copy fasta	ADAT3	chr19	1900399	1918447
ADAT3_chr19_1900399_1918447	0/0	c0003	1104	50	11	12	23	2	2	copy fasta	ADAT3	chr19	1900399	1918447
ADAT3_chr19_1900399_1918447	0/0	c0004	1104	21	9	0	12	0	0	copy fasta	ADAT3	chr19	1900399	1918447
ADAT3_chr19_1900399_1918447	0/0	c0005	1104	6	6	0	0	0	0	copy fasta	ADAT3	chr19	1900399	1918447
ADAT3_chr19_1900399_1918447	0/0	c0006	1104	4	0	0	4	0	0	copy fasta	ADAT3	chr19	1900399	1918447
ADAT3_chr19_1900399_1918447	0/0	c0007	1104	3	0	3	0	0	0	copy fasta	ADAT3	chr19	1900399	1918447
ADAT3_chr19_1900399_1918447	0/0	c0008	1104	3	3	0	0	0	0	copy fasta	ADAT3	chr19	1900399	1918447
ADAT3_chr19_1900399_1918447	0/0	c0009	1104	2	0	0	2	0	0	copy fasta	ADAT3	chr19	1900399	1918447
ADAT3_chr19_1900399_1918447	0/0	c0010	1104	2	0	0	2	0	0	copy fasta	ADAT3	chr19	1900399	1918447
ADAT3_chr19_1900399_1918447	0/0	c0011	1104	1	0	0	0	0	1	copy fasta	ADAT3	chr19	1900399	1918447
ADAT3_chr19_1900399_1918447	0/0	c0012	1104	1	0	0	0	0	1	copy fasta	ADAT3	chr19	1900399	1918447
ADAT3_chr19_1900399_1918447	0/0	c0013	1104	1	0	0	1	0	0	copy fasta	ADAT3	chr19	1900399	1918447
ADAT3_chr19_1900399_1918447	0/0	c0014	1104	1	1	0	0	0	0	copy fasta	ADAT3	chr19	1900399	1918447
ADAT3_chr19_1900399_1918447	0/0	c0015	1104	1	0	1	0	0	0	copy fasta	ADAT3	chr19	1900399	1918447
ADAT3_chr19_1900399_1918447	0/0	c0016	1104	1	1	0	0	0	0	copy fasta	ADAT3	chr19	1900399	1918447
ADAT3_chr19_1900399_1918447	0/0	c0017	1104	1	0	1	0	0	0	copy fasta	ADAT3	chr19	1900399	1918447
ADAT3_chr19_1900399_1918447	0/0	c0018	1104	1	0	0	1	0	0	copy fasta	ADAT3	chr19	1900399	1918447
ADA_chr20_44614522_44656699	0/1	c0001	1092	217	41	55	80	11	29	copy fasta	ADA	chr20	44614522	44656699
ADA_chr20_44614522_44656699	0/0	c0002	1092	56	31	6	12	0	7	copy fasta	ADA	chr20	44614522	44656699
ADA_chr20_44614522_44656699	0/0	c0003	1092	12	4	3	1	3	1	copy fasta	ADA	chr20	44614522	44656699
ADA_chr20_44614522_44656699	0/0	c0004	1092	7	5	2	0	0	0	copy fasta	ADA	chr20	44614522	44656699
ADA_chr20_44614522_44656699	0/0	c0005	1092	6	0	1	3	0	2	copy fasta	ADA	chr20	44614522	44656699
ADA_chr20_44614522_44656699	0/0	c0006	1092	6	0	0	6	0	0	copy fasta	ADA	chr20	44614522	44656699
ADA_chr20_44614522_44656699	0/0	c0007	1092	6	6	0	0	0	0	copy fasta	ADA	chr20	44614522	44656699
ADA_chr20_44614522_44656699	0/0	c0008	1092	4	0	0	3	0	1	copy fasta	ADA	chr20	44614522	44656699
ADA_chr20_44614522_44656699	0/0	c0009	1092	2	0	0	2	0	0	copy fasta	ADA	chr20	44614522	44656699
ADA_chr20_44614522_44656699	0/0	c0010	1092	1	1	0	0	0	0	copy fasta	ADA	chr20	44614522	44656699
ADA_chr20_44614522_44656699	0/0	c0011	1092	1	1	0	0	0	0	copy fasta	ADA	chr20	44614522	44656699
ADA_chr20_44614522_44656699	0/0	c0012	1092	1	1	0	0	0	0	copy fasta	ADA	chr20	44614522	44656699
ADA_chr20_44614522_44656699	0/0	c0013	1092	1	0	1	0	0	0	copy fasta	ADA	chr20	44614522	44656699
ADA_chr20_44614522_44656699	0/0	c0014	1092	1	0	0	1	0	0	copy fasta	ADA	chr20	44614522	44656699
ADA_chr20_44614522_44656699	0/0	c0015	1092	1	0	0	1	0	0	copy fasta	ADA	chr20	44614522	44656699
ADA_chr20_44614522_44656699	0/0	c0016	1092	1	0	0	1	0	0	copy fasta	ADA	chr20	44614522	44656699
ADA_chr20_44614522_44656699	0/0	c0017	1092	1	1	0	0	0	0	copy fasta	ADA	chr20	44614522	44656699
ADA_chr20_44614522_44656699	0/0	c0018	1092	1	1	0	0	0	0	copy fasta	ADA	chr20	44614522	44656699
ADA_chr20_44614522_44656699	0/0	c0019	1092	1	1	0	0	0	0	copy fasta	ADA	chr20	44614522	44656699
ADA_chr20_44614522_44656699	0/0	c0020	1092	1	1	0	0	0	0	copy fasta	ADA	chr20	44614522	44656699
ADA_chr20_44614522_44656699	1/0	c0021	1092	1	0	0	0	0	0	copy fasta	ADA	chr20	44614522	44656699
ADCK1_chr14_77795109_77940014	1/0	c0001	1572	186	50	31	69	13	22	copy fasta	ADCK1	chr14	77795109	77940014
ADCK1_chr14_77795109_77940014	0/1	c0002	1572	59	17	5	28	2	6	copy fasta	ADCK1	chr14	77795109	77940014
ADCK1_chr14_77795109_77940014	0/0	c0003	1572	14	14	0	0	0	0	copy fasta	ADCK1	chr14	77795109	77940014
ADCK1_chr14_77795109_77940014	0/0	c0004	1572	12	1	10	0	1	0	copy fasta	ADCK1	chr14	77795109	77940014
ADCK1_chr14_77795109_77940014	0/0	c0005	1572	3	2	0	0	0	1	copy fasta	ADCK1	chr14	77795109	77940014
ADCK1_chr14_77795109_77940014	0/0	c0006	1572	2	0	0	0	2	0	copy fasta	ADCK1	chr14	77795109	77940014
ADCK1_chr14_77795109_77940014	0/0	c0007	1572	1	0	0	1	0	0	copy fasta	ADCK1	chr14	77795109	77940014
ADCK1_chr14_77795109_77940014	0/0	c0008	1572	1	1	0	0	0	0	copy fasta	ADCK1	chr14	77795109	77940014
ADCK1_chr14_77795109_77940014	0/0	c0009	1572	1	0	0	1	0	0	copy fasta	ADCK1	chr14	77795109	77940014
ADCK1_chr14_77795109_77940014	0/0	c0010	1572	1	1	0	0	0	0	copy fasta	ADCK1	chr14	77795109	77940014
ADCK1_chr14_77795109_77940014	0/0	c0011	1572	1	0	1	0	0	0	copy fasta	ADCK1	chr14	77795109	77940014
ADCK1_chr14_77795109_77940014	0/0	c0012	1572	1	1	0	0	0	0	copy fasta	ADCK1	chr14	77795109	77940014