JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
DGKQ_chr4_953887_978569	0/0	c0044	2829	1	0	0	1	0	0	copy fasta	DGKQ	chr4	953887	978569
DGKZ_chr11_46342463_46385551	1/1	c0001	2787	259	84	58	72	8	35	copy fasta	DGKZ	chr11	46342463	46385551
DGKZ_chr11_46342463_46385551	0/0	c0002	2787	5	5	0	0	0	0	copy fasta	DGKZ	chr11	46342463	46385551
DGKZ_chr11_46342463_46385551	0/0	c0003	2787	4	4	0	0	0	0	copy fasta	DGKZ	chr11	46342463	46385551
DGKZ_chr11_46342463_46385551	0/0	c0004	2787	2	2	0	0	0	0	copy fasta	DGKZ	chr11	46342463	46385551
DGKZ_chr11_46342463_46385551	0/0	c0005	2787	1	1	0	0	0	0	copy fasta	DGKZ	chr11	46342463	46385551
DGKZ_chr11_46342463_46385551	0/0	c0006	2787	1	0	0	0	0	1	copy fasta	DGKZ	chr11	46342463	46385551
DGLUCY_chr14_91109073_91230632	1/1	c0001	1866	92	35	23	17	3	12	copy fasta	DGLUCY	chr14	91109073	91230632
DGLUCY_chr14_91109073_91230632	0/0	c0002	1866	43	21	8	9	1	4	copy fasta	DGLUCY	chr14	91109073	91230632
DGLUCY_chr14_91109073_91230632	0/0	c0003	1866	15	3	7	2	2	1	copy fasta	DGLUCY	chr14	91109073	91230632
DGLUCY_chr14_91109073_91230632	0/0	c0004	1866	13	0	11	0	0	2	copy fasta	DGLUCY	chr14	91109073	91230632
DGLUCY_chr14_91109073_91230632	0/0	c0005	1866	8	2	1	4	0	1	copy fasta	DGLUCY	chr14	91109073	91230632
DGLUCY_chr14_91109073_91230632	0/0	c0006	1866	4	0	0	4	0	0	copy fasta	DGLUCY	chr14	91109073	91230632
DGLUCY_chr14_91109073_91230632	0/0	c0007	1866	4	4	0	0	0	0	copy fasta	DGLUCY	chr14	91109073	91230632
DGLUCY_chr14_91109073_91230632	0/0	c0008	1866	4	4	0	0	0	0	copy fasta	DGLUCY	chr14	91109073	91230632
DGLUCY_chr14_91109073_91230632	0/0	c0009	1866	4	4	0	0	0	0	copy fasta	DGLUCY	chr14	91109073	91230632
DGLUCY_chr14_91109073_91230632	0/0	c0010	1866	3	3	0	0	0	0	copy fasta	DGLUCY	chr14	91109073	91230632
DGLUCY_chr14_91109073_91230632	0/0	c0011	1866	3	3	0	0	0	0	copy fasta	DGLUCY	chr14	91109073	91230632
DGLUCY_chr14_91109073_91230632	0/0	c0012	1866	3	3	0	0	0	0	copy fasta	DGLUCY	chr14	91109073	91230632
DGLUCY_chr14_91109073_91230632	0/0	c0013	1866	3	1	0	1	0	1	copy fasta	DGLUCY	chr14	91109073	91230632
DGLUCY_chr14_91109073_91230632	0/0	c0014	1866	2	2	0	0	0	0	copy fasta	DGLUCY	chr14	91109073	91230632
DGLUCY_chr14_91109073_91230632	0/0	c0015	1866	2	2	0	0	0	0	copy fasta	DGLUCY	chr14	91109073	91230632
DGLUCY_chr14_91109073_91230632	0/0	c0016	1866	2	2	0	0	0	0	copy fasta	DGLUCY	chr14	91109073	91230632
DGLUCY_chr14_91109073_91230632	0/0	c0017	1866	1	0	1	0	0	0	copy fasta	DGLUCY	chr14	91109073	91230632
DGLUCY_chr14_91109073_91230632	0/0	c0018	1866	1	1	0	0	0	0	copy fasta	DGLUCY	chr14	91109073	91230632
DGLUCY_chr14_91109073_91230632	0/0	c0019	1866	1	0	1	0	0	0	copy fasta	DGLUCY	chr14	91109073	91230632
DGLUCY_chr14_91109073_91230632	0/0	c0020	1866	1	0	0	0	0	1	copy fasta	DGLUCY	chr14	91109073	91230632
DGLUCY_chr14_91109073_91230632	0/0	c0021	1866	1	0	0	1	0	0	copy fasta	DGLUCY	chr14	91109073	91230632
DGLUCY_chr14_91109073_91230632	0/0	c0022	1866	1	0	1	0	0	0	copy fasta	DGLUCY	chr14	91109073	91230632
DGLUCY_chr14_91109073_91230632	0/0	c0023	1866	1	1	0	0	0	0	copy fasta	DGLUCY	chr14	91109073	91230632
DGLUCY_chr14_91109073_91230632	0/0	c0024	1866	1	1	0	0	0	0	copy fasta	DGLUCY	chr14	91109073	91230632
DGLUCY_chr14_91109073_91230632	0/0	c0025	1866	1	1	0	0	0	0	copy fasta	DGLUCY	chr14	91109073	91230632
DGLUCY_chr14_91109073_91230632	0/0	c0026	1866	1	0	1	0	0	0	copy fasta	DGLUCY	chr14	91109073	91230632
DGLUCY_chr14_91109073_91230632	0/0	c0027	1866	1	1	0	0	0	0	copy fasta	DGLUCY	chr14	91109073	91230632
DGUOK_chr2_73921880_73963946	1/1	c0001	834	337	89	50	146	11	39	copy fasta	DGUOK	chr2	73921880	73963946
DGUOK_chr2_73921880_73963946	0/0	c0002	834	7	4	3	0	0	0	copy fasta	DGUOK	chr2	73921880	73963946
DGUOK_chr2_73921880_73963946	0/0	c0003	834	2	0	1	0	1	0	copy fasta	DGUOK	chr2	73921880	73963946
DGUOK_chr2_73921880_73963946	0/0	c0004	834	1	0	0	0	0	1	copy fasta	DGUOK	chr2	73921880	73963946
DGUOK_chr2_73921880_73963946	0/0	c0005	834	1	1	0	0	0	0	copy fasta	DGUOK	chr2	73921880	73963946
DGUOK_chr2_73921880_73963946	0/0	c0006	834	1	0	0	1	0	0	copy fasta	DGUOK	chr2	73921880	73963946
DGUOK_chr2_73921880_73963946	0/0	c0007	834	1	0	1	0	0	0	copy fasta	DGUOK	chr2	73921880	73963946
DGUOK_chr2_73921880_73963946	0/0	c0008	834	1	0	0	1	0	0	copy fasta	DGUOK	chr2	73921880	73963946
DGUOK_chr2_73921880_73963946	0/0	c0009	834	1	0	1	0	0	0	copy fasta	DGUOK	chr2	73921880	73963946
DHCR24_chr1_54844627_54892195	0/1	c0001	1551	211	52	34	83	9	32	copy fasta	DHCR24	chr1	54844627	54892195
DHCR24_chr1_54844627_54892195	1/0	c0002	1551	168	31	33	90	7	6	copy fasta	DHCR24	chr1	54844627	54892195
DHCR24_chr1_54844627_54892195	0/0	c0003	1551	1	1	0	0	0	0	copy fasta	DHCR24	chr1	54844627	54892195
DHCR24_chr1_54844627_54892195	0/0	c0004	1551	1	1	0	0	0	0	copy fasta	DHCR24	chr1	54844627	54892195
DHCR24_chr1_54844627_54892195	0/0	c0005	1551	1	0	1	0	0	0	copy fasta	DHCR24	chr1	54844627	54892195
DHCR24_chr1_54844627_54892195	0/0	c0006	1551	1	1	0	0	0	0	copy fasta	DHCR24	chr1	54844627	54892195
DHCR24_chr1_54844627_54892195	0/0	c0007	1551	1	0	1	0	0	0	copy fasta	DHCR24	chr1	54844627	54892195