Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ADCK1_chr14_77795109_77940014	0/0	c0013	1572	1	0	0	0	0	1	copy fasta	ADCK1	chr14	77795109	77940014
ADCK1_chr14_77795109_77940014	0/0	c0014	1572	1	0	1	0	0	0	copy fasta	ADCK1	chr14	77795109	77940014
ADCK1_chr14_77795109_77940014	0/0	c0015	1572	1	1	0	0	0	0	copy fasta	ADCK1	chr14	77795109	77940014
ADCK1_chr14_77795109_77940014	0/0	c0016	1572	1	0	0	1	0	0	copy fasta	ADCK1	chr14	77795109	77940014
ADCK2_chr7_140667945_140700110	1/1	c0001	1881	170	22	42	69	14	21	copy fasta	ADCK2	chr7	140667945	140700110
ADCK2_chr7_140667945_140700110	0/0	c0002	1881	48	40	6	2	0	0	copy fasta	ADCK2	chr7	140667945	140700110
ADCK2_chr7_140667945_140700110	0/0	c0003	1881	46	15	10	13	1	7	copy fasta	ADCK2	chr7	140667945	140700110
ADCK2_chr7_140667945_140700110	0/0	c0004	1881	6	5	1	0	0	0	copy fasta	ADCK2	chr7	140667945	140700110
ADCK2_chr7_140667945_140700110	0/0	c0005	1881	5	5	0	0	0	0	copy fasta	ADCK2	chr7	140667945	140700110
ADCK2_chr7_140667945_140700110	0/0	c0006	1881	3	0	2	0	0	1	copy fasta	ADCK2	chr7	140667945	140700110
ADCK2_chr7_140667945_140700110	0/0	c0007	1881	1	0	0	1	0	0	copy fasta	ADCK2	chr7	140667945	140700110
ADCK2_chr7_140667945_140700110	0/0	c0008	1881	1	0	0	0	1	0	copy fasta	ADCK2	chr7	140667945	140700110
ADCK2_chr7_140667945_140700110	0/0	c0009	1881	1	0	1	0	0	0	copy fasta	ADCK2	chr7	140667945	140700110
ADCK2_chr7_140667945_140700110	0/0	c0010	1881	1	0	1	0	0	0	copy fasta	ADCK2	chr7	140667945	140700110
ADCK2_chr7_140667945_140700110	0/0	c0011	1881	1	0	0	1	0	0	copy fasta	ADCK2	chr7	140667945	140700110
ADCK2_chr7_140667945_140700110	0/0	c0012	1881	1	1	0	0	0	0	copy fasta	ADCK2	chr7	140667945	140700110
ADCK2_chr7_140667945_140700110	0/0	c0013	1881	1	0	0	0	0	1	copy fasta	ADCK2	chr7	140667945	140700110
ADCK2_chr7_140667945_140700110	0/0	c0014	1881	1	0	1	0	0	0	copy fasta	ADCK2	chr7	140667945	140700110
ADCK2_chr7_140667945_140700110	0/0	c0015	1881	1	0	0	0	0	1	copy fasta	ADCK2	chr7	140667945	140700110
ADCK2_chr7_140667945_140700110	0/0	c0016	1881	1	1	0	0	0	0	copy fasta	ADCK2	chr7	140667945	140700110
ADCK2_chr7_140667945_140700110	0/0	c0017	1881	1	1	0	0	0	0	copy fasta	ADCK2	chr7	140667945	140700110
ADCK2_chr7_140667945_140700110	0/0	c0018	1881	1	0	0	0	0	1	copy fasta	ADCK2	chr7	140667945	140700110
ADCK5_chr8_144369047_144398242	1/0	c0001	1743	156	35	31	62	3	24	copy fasta	ADCK5	chr8	144369047	144398242
ADCK5_chr8_144369047_144398242	0/1	c0002	1758	120	13	25	57	11	13	copy fasta	ADCK5	chr8	144369047	144398242
ADCK5_chr8_144369047_144398242	0/0	c0003	1743	50	42	5	0	1	2	copy fasta	ADCK5	chr8	144369047	144398242
ADCK5_chr8_144369047_144398242	0/0	c0004	1743	5	2	0	2	0	1	copy fasta	ADCK5	chr8	144369047	144398242
ADCK5_chr8_144369047_144398242	0/0	c0005	1758	4	0	0	4	0	0	copy fasta	ADCK5	chr8	144369047	144398242
ADCK5_chr8_144369047_144398242	0/0	c0006	1743	3	0	0	3	0	0	copy fasta	ADCK5	chr8	144369047	144398242
ADCK5_chr8_144369047_144398242	0/0	c0007	1758	1	0	0	1	0	0	copy fasta	ADCK5	chr8	144369047	144398242
ADCK5_chr8_144369047_144398242	0/0	c0008	1759	1	0	1	0	0	0	copy fasta	ADCK5	chr8	144369047	144398242
ADCK5_chr8_144369047_144398242	0/0	c0009	1758	1	0	0	1	0	0	copy fasta	ADCK5	chr8	144369047	144398242
ADCK5_chr8_144369047_144398242	0/0	c0010	1743	1	1	0	0	0	0	copy fasta	ADCK5	chr8	144369047	144398242
ADCK5_chr8_144369047_144398242	0/0	c0011	1732	1	0	0	0	1	0	copy fasta	ADCK5	chr8	144369047	144398242
ADCK5_chr8_144369047_144398242	0/0	c0012	1743	1	0	1	0	0	0	copy fasta	ADCK5	chr8	144369047	144398242
ADCK5_chr8_144369047_144398242	0/0	c0013	1743	1	1	0	0	0	0	copy fasta	ADCK5	chr8	144369047	144398242
ADCK5_chr8_144369047_144398242	0/0	c0014	1743	1	0	1	0	0	0	copy fasta	ADCK5	chr8	144369047	144398242
ADCY10_chr1_167804386_167919134	0/0	c0001	4833	51	27	7	12	0	5	copy fasta	ADCY10	chr1	167804386	167919134
ADCY10_chr1_167804386_167919134	0/0	c0002	4833	36	3	8	19	1	5	copy fasta	ADCY10	chr1	167804386	167919134
ADCY10_chr1_167804386_167919134	0/0	c0003	4833	34	0	2	26	0	6	copy fasta	ADCY10	chr1	167804386	167919134
ADCY10_chr1_167804386_167919134	0/0	c0004	4833	27	12	1	13	0	1	copy fasta	ADCY10	chr1	167804386	167919134
ADCY10_chr1_167804386_167919134	0/0	c0005	4833	24	4	8	12	0	0	copy fasta	ADCY10	chr1	167804386	167919134
ADCY10_chr1_167804386_167919134	0/0	c0006	4833	20	2	2	5	1	10	copy fasta	ADCY10	chr1	167804386	167919134
ADCY10_chr1_167804386_167919134	0/0	c0007	4833	19	9	3	5	0	2	copy fasta	ADCY10	chr1	167804386	167919134
ADCY10_chr1_167804386_167919134	1/0	c0008	4833	16	0	3	3	5	4	copy fasta	ADCY10	chr1	167804386	167919134
ADCY10_chr1_167804386_167919134	0/0	c0009	4833	10	3	4	0	2	1	copy fasta	ADCY10	chr1	167804386	167919134
ADCY10_chr1_167804386_167919134	0/0	c0010	4833	9	1	4	3	1	0	copy fasta	ADCY10	chr1	167804386	167919134
ADCY10_chr1_167804386_167919134	0/0	c0011	4833	7	7	0	0	0	0	copy fasta	ADCY10	chr1	167804386	167919134
ADCY10_chr1_167804386_167919134	0/0	c0012	4833	6	0	0	6	0	0	copy fasta	ADCY10	chr1	167804386	167919134
ADCY10_chr1_167804386_167919134	0/0	c0013	4833	5	0	2	2	0	1	copy fasta	ADCY10	chr1	167804386	167919134
ADCY10_chr1_167804386_167919134	0/0	c0014	4833	5	1	1	2	0	1	copy fasta	ADCY10	chr1	167804386	167919134