JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
DLG5_chr10_77785791_77931755	0/0	c0044	5760	1	0	0	1	0	0	copy fasta	DLG5	chr10	77785791	77931755
DLG5_chr10_77785791_77931755	0/0	c0045	5760	1	0	0	1	0	0	copy fasta	DLG5	chr10	77785791	77931755
DLG5_chr10_77785791_77931755	0/0	c0046	5760	1	0	1	0	0	0	copy fasta	DLG5	chr10	77785791	77931755
DLG5_chr10_77785791_77931755	0/0	c0047	5760	1	0	0	0	0	1	copy fasta	DLG5	chr10	77785791	77931755
DLG5_chr10_77785791_77931755	0/0	c0048	5760	1	1	0	0	0	0	copy fasta	DLG5	chr10	77785791	77931755
DLG5_chr10_77785791_77931755	0/0	c0049	5760	1	0	0	1	0	0	copy fasta	DLG5	chr10	77785791	77931755
DLG5_chr10_77785791_77931755	0/0	c0050	5760	1	0	0	0	0	1	copy fasta	DLG5	chr10	77785791	77931755
DLG5_chr10_77785791_77931755	0/0	c0051	5760	1	1	0	0	0	0	copy fasta	DLG5	chr10	77785791	77931755
DLG5_chr10_77785791_77931755	0/0	c0052	5760	1	1	0	0	0	0	copy fasta	DLG5	chr10	77785791	77931755
DLG5_chr10_77785791_77931755	0/0	c0053	5760	1	1	0	0	0	0	copy fasta	DLG5	chr10	77785791	77931755
DLG5_chr10_77785791_77931755	0/0	c0054	5760	1	1	0	0	0	0	copy fasta	DLG5	chr10	77785791	77931755
DLG5_chr10_77785791_77931755	0/0	c0055	5760	1	1	0	0	0	0	copy fasta	DLG5	chr10	77785791	77931755
DLG5_chr10_77785791_77931755	0/0	c0056	5760	1	1	0	0	0	0	copy fasta	DLG5	chr10	77785791	77931755
DLG5_chr10_77785791_77931755	0/0	c0057	5760	1	1	0	0	0	0	copy fasta	DLG5	chr10	77785791	77931755
DLG5_chr10_77785791_77931755	0/0	c0058	5760	1	0	0	1	0	0	copy fasta	DLG5	chr10	77785791	77931755
DLGAP1_chr18_3491032_4460307	0/0	c0001	2934	37	22	7	2	2	4	copy fasta	DLGAP1	chr18	3491032	4460307
DLGAP1_chr18_3491032_4460307	0/0	c0002	2934	12	12	0	0	0	0	copy fasta	DLGAP1	chr18	3491032	4460307
DLGAP1_chr18_3491032_4460307	0/0	c0003	2934	11	7	1	2	0	1	copy fasta	DLGAP1	chr18	3491032	4460307
DLGAP1_chr18_3491032_4460307	0/0	c0004	2934	9	9	0	0	0	0	copy fasta	DLGAP1	chr18	3491032	4460307
DLGAP1_chr18_3491032_4460307	0/0	c0005	2934	5	1	2	0	1	1	copy fasta	DLGAP1	chr18	3491032	4460307
DLGAP1_chr18_3491032_4460307	0/0	c0006	2934	2	2	0	0	0	0	copy fasta	DLGAP1	chr18	3491032	4460307
DLGAP1_chr18_3491032_4460307	0/0	c0007	2934	1	0	0	0	1	0	copy fasta	DLGAP1	chr18	3491032	4460307
DLGAP1_chr18_3491032_4460307	0/0	c0008	2934	1	0	1	0	0	0	copy fasta	DLGAP1	chr18	3491032	4460307
DLGAP1_chr18_3491032_4460307	0/0	c0009	2934	1	0	1	0	0	0	copy fasta	DLGAP1	chr18	3491032	4460307
DLGAP1_chr18_3491032_4460307	0/0	c0010	2934	1	1	0	0	0	0	copy fasta	DLGAP1	chr18	3491032	4460307
DLGAP2_chr8_732628_1713476	0/0	c0001	3168	11	5	2	1	0	3	copy fasta	DLGAP2	chr8	732628	1713476
DLGAP2_chr8_732628_1713476	0/0	c0002	3168	9	4	2	1	0	2	copy fasta	DLGAP2	chr8	732628	1713476
DLGAP2_chr8_732628_1713476	0/0	c0003	3168	8	7	1	0	0	0	copy fasta	DLGAP2	chr8	732628	1713476
DLGAP2_chr8_732628_1713476	0/0	c0004	3168	3	0	1	1	0	1	copy fasta	DLGAP2	chr8	732628	1713476
DLGAP2_chr8_732628_1713476	0/0	c0005	3168	2	1	1	0	0	0	copy fasta	DLGAP2	chr8	732628	1713476
DLGAP2_chr8_732628_1713476	0/0	c0006	3168	1	1	0	0	0	0	copy fasta	DLGAP2	chr8	732628	1713476
DLGAP2_chr8_732628_1713476	0/0	c0007	3168	1	1	0	0	0	0	copy fasta	DLGAP2	chr8	732628	1713476
DLGAP2_chr8_732628_1713476	0/0	c0008	3168	1	1	0	0	0	0	copy fasta	DLGAP2	chr8	732628	1713476
DLGAP2_chr8_732628_1713476	0/0	c0009	3168	1	1	0	0	0	0	copy fasta	DLGAP2	chr8	732628	1713476
DLGAP2_chr8_732628_1713476	0/0	c0010	3168	1	0	1	0	0	0	copy fasta	DLGAP2	chr8	732628	1713476
DLGAP2_chr8_732628_1713476	0/0	c0011	3168	1	1	0	0	0	0	copy fasta	DLGAP2	chr8	732628	1713476
DLGAP2_chr8_732628_1713476	0/0	c0012	3168	1	0	0	1	0	0	copy fasta	DLGAP2	chr8	732628	1713476
DLGAP3_chr1_34860436_34934650	1/0	c0001	2940	242	86	48	66	9	32	copy fasta	DLGAP3	chr1	34860436	34934650
DLGAP3_chr1_34860436_34934650	0/0	c0002	2940	11	0	8	3	0	0	copy fasta	DLGAP3	chr1	34860436	34934650
DLGAP3_chr1_34860436_34934650	0/0	c0003	2940	3	3	0	0	0	0	copy fasta	DLGAP3	chr1	34860436	34934650
DLGAP3_chr1_34860436_34934650	0/0	c0004	2940	2	2	0	0	0	0	copy fasta	DLGAP3	chr1	34860436	34934650
DLGAP3_chr1_34860436_34934650	0/0	c0005	2940	1	0	0	1	0	0	copy fasta	DLGAP3	chr1	34860436	34934650
DLGAP3_chr1_34860436_34934650	0/0	c0006	2940	1	1	0	0	0	0	copy fasta	DLGAP3	chr1	34860436	34934650
DLGAP3_chr1_34860436_34934650	0/1	c0007	2940	1	0	0	0	0	0	copy fasta	DLGAP3	chr1	34860436	34934650
DLGAP3_chr1_34860436_34934650	0/0	c0008	2940	1	1	0	0	0	0	copy fasta	DLGAP3	chr1	34860436	34934650
DLGAP3_chr1_34860436_34934650	0/0	c0009	2940	1	1	0	0	0	0	copy fasta	DLGAP3	chr1	34860436	34934650
DLGAP3_chr1_34860436_34934650	0/0	c0010	2940	1	0	1	0	0	0	copy fasta	DLGAP3	chr1	34860436	34934650
DLGAP3_chr1_34860436_34934650	0/0	c0011	2940	1	0	0	0	1	0	copy fasta	DLGAP3	chr1	34860436	34934650
DLGAP3_chr1_34860436_34934650	0/0	c0012	2940	1	0	1	0	0	0	copy fasta	DLGAP3	chr1	34860436	34934650
DLGAP4_chr20_36301339_36533633	1/1	c0001	2979	115	46	25	29	2	11	copy fasta	DLGAP4	chr20	36301339	36533633