JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
DLGAP4_chr20_36301339_36533633	0/0	c0002	2979	8	7	1	0	0	0	copy fasta	DLGAP4	chr20	36301339	36533633
DLGAP4_chr20_36301339_36533633	0/0	c0003	2979	7	0	0	3	0	4	copy fasta	DLGAP4	chr20	36301339	36533633
DLGAP4_chr20_36301339_36533633	0/0	c0004	2979	3	0	1	0	0	2	copy fasta	DLGAP4	chr20	36301339	36533633
DLGAP4_chr20_36301339_36533633	0/0	c0005	2979	2	2	0	0	0	0	copy fasta	DLGAP4	chr20	36301339	36533633
DLGAP4_chr20_36301339_36533633	0/0	c0006	2979	2	0	2	0	0	0	copy fasta	DLGAP4	chr20	36301339	36533633
DLGAP4_chr20_36301339_36533633	0/0	c0007	2979	1	1	0	0	0	0	copy fasta	DLGAP4	chr20	36301339	36533633
DLGAP4_chr20_36301339_36533633	0/0	c0008	2979	1	1	0	0	0	0	copy fasta	DLGAP4	chr20	36301339	36533633
DLGAP4_chr20_36301339_36533633	0/0	c0009	2979	1	1	0	0	0	0	copy fasta	DLGAP4	chr20	36301339	36533633
DLGAP4_chr20_36301339_36533633	0/0	c0010	2979	1	0	0	0	1	0	copy fasta	DLGAP4	chr20	36301339	36533633
DLGAP4_chr20_36301339_36533633	0/0	c0011	2979	1	0	1	0	0	0	copy fasta	DLGAP4	chr20	36301339	36533633
DLGAP4_chr20_36301339_36533633	0/0	c0012	2979	1	0	0	0	1	0	copy fasta	DLGAP4	chr20	36301339	36533633
DLGAP4_chr20_36301339_36533633	0/0	c0013	2979	1	0	0	0	0	1	copy fasta	DLGAP4	chr20	36301339	36533633
DLGAP5_chr14_55143135_55196585	1/1	c0001	2541	123	6	29	66	6	14	copy fasta	DLGAP5	chr14	55143135	55196585
DLGAP5_chr14_55143135_55196585	0/0	c0002	2541	68	23	4	39	0	2	copy fasta	DLGAP5	chr14	55143135	55196585
DLGAP5_chr14_55143135_55196585	0/0	c0003	2541	65	9	8	32	4	12	copy fasta	DLGAP5	chr14	55143135	55196585
DLGAP5_chr14_55143135_55196585	0/0	c0004	2541	44	28	10	0	0	6	copy fasta	DLGAP5	chr14	55143135	55196585
DLGAP5_chr14_55143135_55196585	0/0	c0005	2541	40	16	5	14	0	5	copy fasta	DLGAP5	chr14	55143135	55196585
DLGAP5_chr14_55143135_55196585	0/0	c0006	2541	8	0	0	8	0	0	copy fasta	DLGAP5	chr14	55143135	55196585
DLGAP5_chr14_55143135_55196585	0/0	c0007	2541	6	4	2	0	0	0	copy fasta	DLGAP5	chr14	55143135	55196585
DLGAP5_chr14_55143135_55196585	0/0	c0008	2541	2	1	1	0	0	0	copy fasta	DLGAP5	chr14	55143135	55196585
DLGAP5_chr14_55143135_55196585	0/0	c0009	2541	1	1	0	0	0	0	copy fasta	DLGAP5	chr14	55143135	55196585
DLGAP5_chr14_55143135_55196585	0/0	c0010	2541	1	0	0	1	0	0	copy fasta	DLGAP5	chr14	55143135	55196585
DLGAP5_chr14_55143135_55196585	0/0	c0011	2541	1	0	0	1	0	0	copy fasta	DLGAP5	chr14	55143135	55196585
DLGAP5_chr14_55143135_55196585	0/0	c0012	2541	1	0	0	0	0	1	copy fasta	DLGAP5	chr14	55143135	55196585
DLGAP5_chr14_55143135_55196585	0/0	c0013	2541	1	0	1	0	0	0	copy fasta	DLGAP5	chr14	55143135	55196585
DLGAP5_chr14_55143135_55196585	0/0	c0014	2541	1	0	0	1	0	0	copy fasta	DLGAP5	chr14	55143135	55196585
DLK1_chr14_100721892_100743224	0/0	c0001	1152	291	55	43	158	7	28	copy fasta	DLK1	chr14	100721892	100743224
DLK1_chr14_100721892_100743224	0/1	c0002	1152	54	8	22	1	7	15	copy fasta	DLK1	chr14	100721892	100743224
DLK1_chr14_100721892_100743224	0/0	c0003	1152	19	0	0	19	0	0	copy fasta	DLK1	chr14	100721892	100743224
DLK1_chr14_100721892_100743224	0/0	c0004	1152	16	16	0	0	0	0	copy fasta	DLK1	chr14	100721892	100743224
DLK1_chr14_100721892_100743224	0/0	c0005	1152	15	0	5	8	1	1	copy fasta	DLK1	chr14	100721892	100743224
DLK1_chr14_100721892_100743224	0/0	c0006	1152	6	6	0	0	0	0	copy fasta	DLK1	chr14	100721892	100743224
DLK1_chr14_100721892_100743224	0/0	c0007	1152	5	5	0	0	0	0	copy fasta	DLK1	chr14	100721892	100743224
DLK1_chr14_100721892_100743224	0/0	c0008	1152	4	3	1	0	0	0	copy fasta	DLK1	chr14	100721892	100743224
DLK1_chr14_100721892_100743224	0/0	c0009	1152	3	1	2	0	0	0	copy fasta	DLK1	chr14	100721892	100743224
DLK1_chr14_100721892_100743224	0/0	c0010	1152	2	2	0	0	0	0	copy fasta	DLK1	chr14	100721892	100743224
DLK1_chr14_100721892_100743224	1/0	c0011	1152	1	0	0	0	0	0	copy fasta	DLK1	chr14	100721892	100743224
DLK1_chr14_100721892_100743224	0/0	c0012	1152	1	0	0	1	0	0	copy fasta	DLK1	chr14	100721892	100743224
DLK1_chr14_100721892_100743224	0/0	c0013	1152	1	0	0	0	1	0	copy fasta	DLK1	chr14	100721892	100743224
DLK1_chr14_100721892_100743224	0/0	c0014	1152	1	0	0	1	0	0	copy fasta	DLK1	chr14	100721892	100743224
DLK1_chr14_100721892_100743224	0/0	c0015	1152	1	1	0	0	0	0	copy fasta	DLK1	chr14	100721892	100743224
DLK1_chr14_100721892_100743224	0/0	c0016	1152	1	0	1	0	0	0	copy fasta	DLK1	chr14	100721892	100743224
DLK1_chr14_100721892_100743224	0/0	c0017	1152	1	0	1	0	0	0	copy fasta	DLK1	chr14	100721892	100743224
DLK1_chr14_100721892_100743224	0/0	c0018	1152	1	0	1	0	0	0	copy fasta	DLK1	chr14	100721892	100743224
DLK1_chr14_100721892_100743224	0/0	c0019	1152	1	1	0	0	0	0	copy fasta	DLK1	chr14	100721892	100743224
DLK2_chr6_43445352_43460548	1/1	c0001	1152	264	38	54	134	7	29	copy fasta	DLK2	chr6	43445352	43460548
DLK2_chr6_43445352_43460548	0/0	c0002	1152	89	54	10	20	2	3	copy fasta	DLK2	chr6	43445352	43460548
DLK2_chr6_43445352_43460548	0/0	c0003	1152	5	1	0	0	1	3	copy fasta	DLK2	chr6	43445352	43460548
DLK2_chr6_43445352_43460548	0/0	c0004	1152	4	4	0	0	0	0	copy fasta	DLK2	chr6	43445352	43460548
DLK2_chr6_43445352_43460548	0/0	c0005	1152	3	0	0	3	0	0	copy fasta	DLK2	chr6	43445352	43460548