JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
DLX6_chr7_97000553_97016040	0/0	c0003	882	3	0	0	3	0	0	copy fasta	DLX6	chr7	97000553	97016040
DLX6_chr7_97000553_97016040	0/0	c0004	882	2	1	0	1	0	0	copy fasta	DLX6	chr7	97000553	97016040
DLX6_chr7_97000553_97016040	0/0	c0005	882	2	2	0	0	0	0	copy fasta	DLX6	chr7	97000553	97016040
DLX6_chr7_97000553_97016040	0/0	c0006	870	1	0	0	1	0	0	copy fasta	DLX6	chr7	97000553	97016040
DLX6_chr7_97000553_97016040	0/0	c0007	882	1	0	0	1	0	0	copy fasta	DLX6	chr7	97000553	97016040
DLX6_chr7_97000553_97016040	0/0	c0008	882	1	0	1	0	0	0	copy fasta	DLX6	chr7	97000553	97016040
DLX6_chr7_97000553_97016040	0/0	c0009	882	1	0	0	1	0	0	copy fasta	DLX6	chr7	97000553	97016040
DLX6_chr7_97000553_97016040	0/0	c0010	906	1	0	0	1	0	0	copy fasta	DLX6	chr7	97000553	97016040
DLX6_chr7_97000553_97016040	0/0	c0011	882	1	1	0	0	0	0	copy fasta	DLX6	chr7	97000553	97016040
DMAC1_chr9_7791500_7804778	1/1	c0001	339	294	72	38	136	11	35	copy fasta	DMAC1	chr9	7791500	7804778
DMAC1_chr9_7791500_7804778	0/0	c0002	339	171	18	46	86	7	14	copy fasta	DMAC1	chr9	7791500	7804778
DMAC1_chr9_7791500_7804778	0/0	c0003	339	5	0	0	4	0	1	copy fasta	DMAC1	chr9	7791500	7804778
DMAC1_chr9_7791500_7804778	0/0	c0004	339	1	1	0	0	0	0	copy fasta	DMAC1	chr9	7791500	7804778
DMAC1_chr9_7791500_7804778	0/0	c0005	339	1	0	0	1	0	0	copy fasta	DMAC1	chr9	7791500	7804778
DMAC1_chr9_7791500_7804778	0/0	c0006	339	1	0	0	1	0	0	copy fasta	DMAC1	chr9	7791500	7804778
DMAC1_chr9_7791500_7804778	0/0	c0007	339	1	1	0	0	0	0	copy fasta	DMAC1	chr9	7791500	7804778
DMAC2L_chr14_50307324_50332957	0/1	c0001	603	223	54	44	97	7	20	copy fasta	DMAC2L	chr14	50307324	50332957
DMAC2L_chr14_50307324_50332957	1/0	c0002	603	174	34	31	75	9	24	copy fasta	DMAC2L	chr14	50307324	50332957
DMAC2L_chr14_50307324_50332957	0/0	c0003	603	1	0	1	0	0	0	copy fasta	DMAC2L	chr14	50307324	50332957
DMAC2L_chr14_50307324_50332957	0/0	c0004	603	1	1	0	0	0	0	copy fasta	DMAC2L	chr14	50307324	50332957
DMAC2L_chr14_50307324_50332957	0/0	c0005	603	1	1	0	0	0	0	copy fasta	DMAC2L	chr14	50307324	50332957
DMAC2_chr19_41426318_41444912	1/1	c0001	774	206	44	35	80	12	33	copy fasta	DMAC2	chr19	41426318	41444912
DMAC2_chr19_41426318_41444912	0/0	c0002	774	178	23	34	100	4	17	copy fasta	DMAC2	chr19	41426318	41444912
DMAC2_chr19_41426318_41444912	0/0	c0003	774	19	15	1	3	0	0	copy fasta	DMAC2	chr19	41426318	41444912
DMAC2_chr19_41426318_41444912	0/0	c0004	774	8	7	1	0	0	0	copy fasta	DMAC2	chr19	41426318	41444912
DMAC2_chr19_41426318_41444912	0/0	c0005	774	7	7	0	0	0	0	copy fasta	DMAC2	chr19	41426318	41444912
DMAC2_chr19_41426318_41444912	0/0	c0006	774	2	2	0	0	0	0	copy fasta	DMAC2	chr19	41426318	41444912
DMAC2_chr19_41426318_41444912	0/0	c0007	774	1	0	1	0	0	0	copy fasta	DMAC2	chr19	41426318	41444912
DMAC2_chr19_41426318_41444912	0/0	c0008	774	1	1	0	0	0	0	copy fasta	DMAC2	chr19	41426318	41444912
DMAC2_chr19_41426318_41444912	0/0	c0009	774	1	0	0	1	0	0	copy fasta	DMAC2	chr19	41426318	41444912
DMAC2_chr19_41426318_41444912	0/0	c0010	774	1	0	1	0	0	0	copy fasta	DMAC2	chr19	41426318	41444912
DMAC2_chr19_41426318_41444912	0/0	c0011	774	1	0	1	0	0	0	copy fasta	DMAC2	chr19	41426318	41444912
DMAC2_chr19_41426318_41444912	0/0	c0012	774	1	1	0	0	0	0	copy fasta	DMAC2	chr19	41426318	41444912
DMAP1_chr1_44208471_44225673	1/1	c0001	1404	394	85	66	181	16	44	copy fasta	DMAP1	chr1	44208471	44225673
DMAP1_chr1_44208471_44225673	0/0	c0002	1404	4	3	1	0	0	0	copy fasta	DMAP1	chr1	44208471	44225673
DMAP1_chr1_44208471_44225673	0/0	c0003	1404	2	2	0	0	0	0	copy fasta	DMAP1	chr1	44208471	44225673
DMAP1_chr1_44208471_44225673	0/0	c0004	1404	1	0	0	1	0	0	copy fasta	DMAP1	chr1	44208471	44225673
DMAP1_chr1_44208471_44225673	0/0	c0005	1404	1	1	0	0	0	0	copy fasta	DMAP1	chr1	44208471	44225673
DMAP1_chr1_44208471_44225673	0/0	c0006	1384	1	0	0	1	0	0	copy fasta	DMAP1	chr1	44208471	44225673
DMAP1_chr1_44208471_44225673	0/0	c0007	1404	1	1	0	0	0	0	copy fasta	DMAP1	chr1	44208471	44225673
DMAP1_chr1_44208471_44225673	0/0	c0008	1404	1	0	0	1	0	0	copy fasta	DMAP1	chr1	44208471	44225673
DMAP1_chr1_44208471_44225673	0/0	c0009	1404	1	0	0	1	0	0	copy fasta	DMAP1	chr1	44208471	44225673
DMAP1_chr1_44208471_44225673	0/0	c0010	1404	1	0	0	1	0	0	copy fasta	DMAP1	chr1	44208471	44225673
DMAP1_chr1_44208471_44225673	0/0	c0011	1404	1	0	1	0	0	0	copy fasta	DMAP1	chr1	44208471	44225673
DMBT1_chr10_122555754_122648736	0/0	c0001	7242	21	0	9	8	2	2	copy fasta	DMBT1	chr10	122555754	122648736
DMBT1_chr10_122555754_122648736	0/0	c0002	6081	17	0	0	16	0	1	copy fasta	DMBT1	chr10	122555754	122648736
DMBT1_chr10_122555754_122648736	0/0	c0003	6468	15	0	1	13	0	1	copy fasta	DMBT1	chr10	122555754	122648736
DMBT1_chr10_122555754_122648736	0/0	c0004	7242	13	1	5	3	2	2	copy fasta	DMBT1	chr10	122555754	122648736
DMBT1_chr10_122555754_122648736	0/0	c0005	4971	11	0	0	11	0	0	copy fasta	DMBT1	chr10	122555754	122648736
DMBT1_chr10_122555754_122648736	0/0	c0006	6468	9	0	4	0	2	3	copy fasta	DMBT1	chr10	122555754	122648736