Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ADGRF1_chr6_46992708_47047332	0/0	c0023	2733	1	1	0	0	0	0	copy fasta	ADGRF1	chr6	46992708	47047332
ADGRF1_chr6_46992708_47047332	0/0	c0024	2733	1	0	1	0	0	0	copy fasta	ADGRF1	chr6	46992708	47047332
ADGRF1_chr6_46992708_47047332	0/0	c0025	2733	1	1	0	0	0	0	copy fasta	ADGRF1	chr6	46992708	47047332
ADGRF3_chr2_26303175_26351789	0/0	c0001	3015	159	41	40	58	9	11	copy fasta	ADGRF3	chr2	26303175	26351789
ADGRF3_chr2_26303175_26351789	0/1	c0002	3015	72	15	12	30	3	11	copy fasta	ADGRF3	chr2	26303175	26351789
ADGRF3_chr2_26303175_26351789	0/0	c0003	3015	7	0	0	6	0	1	copy fasta	ADGRF3	chr2	26303175	26351789
ADGRF3_chr2_26303175_26351789	0/0	c0004	3015	5	1	4	0	0	0	copy fasta	ADGRF3	chr2	26303175	26351789
ADGRF3_chr2_26303175_26351789	0/0	c0005	3015	5	5	0	0	0	0	copy fasta	ADGRF3	chr2	26303175	26351789
ADGRF3_chr2_26303175_26351789	0/0	c0006	3015	5	0	0	0	2	3	copy fasta	ADGRF3	chr2	26303175	26351789
ADGRF3_chr2_26303175_26351789	1/0	c0007	3015	5	2	0	1	0	1	copy fasta	ADGRF3	chr2	26303175	26351789
ADGRF3_chr2_26303175_26351789	0/0	c0008	3015	4	3	1	0	0	0	copy fasta	ADGRF3	chr2	26303175	26351789
ADGRF3_chr2_26303175_26351789	0/0	c0009	3015	4	1	2	0	0	1	copy fasta	ADGRF3	chr2	26303175	26351789
ADGRF3_chr2_26303175_26351789	0/0	c0010	3015	4	4	0	0	0	0	copy fasta	ADGRF3	chr2	26303175	26351789
ADGRF3_chr2_26303175_26351789	0/0	c0011	3015	4	0	0	4	0	0	copy fasta	ADGRF3	chr2	26303175	26351789
ADGRF3_chr2_26303175_26351789	0/0	c0012	3015	3	1	2	0	0	0	copy fasta	ADGRF3	chr2	26303175	26351789
ADGRF3_chr2_26303175_26351789	0/0	c0013	3015	3	3	0	0	0	0	copy fasta	ADGRF3	chr2	26303175	26351789
ADGRF3_chr2_26303175_26351789	0/0	c0014	3015	3	0	2	0	1	0	copy fasta	ADGRF3	chr2	26303175	26351789
ADGRF3_chr2_26303175_26351789	0/0	c0015	3015	3	0	1	0	1	1	copy fasta	ADGRF3	chr2	26303175	26351789
ADGRF3_chr2_26303175_26351789	0/0	c0016	3015	3	0	3	0	0	0	copy fasta	ADGRF3	chr2	26303175	26351789
ADGRF3_chr2_26303175_26351789	0/0	c0017	3015	2	1	1	0	0	0	copy fasta	ADGRF3	chr2	26303175	26351789
ADGRF3_chr2_26303175_26351789	0/0	c0018	3015	2	0	0	2	0	0	copy fasta	ADGRF3	chr2	26303175	26351789
ADGRF3_chr2_26303175_26351789	0/0	c0019	3015	2	0	0	2	0	0	copy fasta	ADGRF3	chr2	26303175	26351789
ADGRF3_chr2_26303175_26351789	0/0	c0020	3015	2	0	0	2	0	0	copy fasta	ADGRF3	chr2	26303175	26351789
ADGRF3_chr2_26303175_26351789	0/0	c0021	3015	2	2	0	0	0	0	copy fasta	ADGRF3	chr2	26303175	26351789
ADGRF3_chr2_26303175_26351789	0/0	c0022	3015	1	0	1	0	0	0	copy fasta	ADGRF3	chr2	26303175	26351789
ADGRF3_chr2_26303175_26351789	0/0	c0023	3015	1	1	0	0	0	0	copy fasta	ADGRF3	chr2	26303175	26351789
ADGRF3_chr2_26303175_26351789	0/0	c0024	3015	1	0	1	0	0	0	copy fasta	ADGRF3	chr2	26303175	26351789
ADGRF3_chr2_26303175_26351789	0/0	c0025	3015	1	0	0	1	0	0	copy fasta	ADGRF3	chr2	26303175	26351789
ADGRF3_chr2_26303175_26351789	0/0	c0026	3015	1	1	0	0	0	0	copy fasta	ADGRF3	chr2	26303175	26351789
ADGRF3_chr2_26303175_26351789	0/0	c0027	3015	1	1	0	0	0	0	copy fasta	ADGRF3	chr2	26303175	26351789
ADGRF3_chr2_26303175_26351789	0/0	c0028	3015	1	1	0	0	0	0	copy fasta	ADGRF3	chr2	26303175	26351789
ADGRF3_chr2_26303175_26351789	0/0	c0029	3015	1	1	0	0	0	0	copy fasta	ADGRF3	chr2	26303175	26351789
ADGRF3_chr2_26303175_26351789	0/0	c0030	3015	1	1	0	0	0	0	copy fasta	ADGRF3	chr2	26303175	26351789
ADGRF3_chr2_26303175_26351789	0/0	c0031	3015	1	1	0	0	0	0	copy fasta	ADGRF3	chr2	26303175	26351789
ADGRF3_chr2_26303175_26351789	0/0	c0032	3015	1	1	0	0	0	0	copy fasta	ADGRF3	chr2	26303175	26351789
ADGRF3_chr2_26303175_26351789	0/0	c0033	3015	1	0	0	0	0	1	copy fasta	ADGRF3	chr2	26303175	26351789
ADGRF3_chr2_26303175_26351789	0/0	c0034	3015	1	0	0	1	0	0	copy fasta	ADGRF3	chr2	26303175	26351789
ADGRF3_chr2_26303175_26351789	0/0	c0035	3015	1	0	1	0	0	0	copy fasta	ADGRF3	chr2	26303175	26351789
ADGRF3_chr2_26303175_26351789	0/0	c0036	3015	1	1	0	0	0	0	copy fasta	ADGRF3	chr2	26303175	26351789
ADGRF3_chr2_26303175_26351789	0/0	c0037	3015	1	0	0	0	1	0	copy fasta	ADGRF3	chr2	26303175	26351789
ADGRF3_chr2_26303175_26351789	0/0	c0038	3015	1	0	0	0	1	0	copy fasta	ADGRF3	chr2	26303175	26351789
ADGRF3_chr2_26303175_26351789	0/0	c0039	3015	1	0	1	0	0	0	copy fasta	ADGRF3	chr2	26303175	26351789
ADGRF3_chr2_26303175_26351789	0/0	c0040	3015	1	0	0	1	0	0	copy fasta	ADGRF3	chr2	26303175	26351789
ADGRF3_chr2_26303175_26351789	0/0	c0041	3015	1	1	0	0	0	0	copy fasta	ADGRF3	chr2	26303175	26351789
ADGRF3_chr2_26303175_26351789	0/0	c0042	3015	1	1	0	0	0	0	copy fasta	ADGRF3	chr2	26303175	26351789
ADGRF3_chr2_26303175_26351789	0/0	c0043	3015	1	0	0	1	0	0	copy fasta	ADGRF3	chr2	26303175	26351789
ADGRF3_chr2_26303175_26351789	0/0	c0044	3015	1	0	0	1	0	0	copy fasta	ADGRF3	chr2	26303175	26351789
ADGRF4_chr6_47693580_47727014	0/1	c0001	2088	296	52	68	140	12	23	copy fasta	ADGRF4	chr6	47693580	47727014
ADGRF4_chr6_47693580_47727014	1/0	c0002	2088	69	33	4	20	2	9	copy fasta	ADGRF4	chr6	47693580	47727014
ADGRF4_chr6_47693580_47727014	0/0	c0003	2088	6	5	1	0	0	0	copy fasta	ADGRF4	chr6	47693580	47727014