Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
AFF1_chr4_86930011_87146039	0/0	c0029	3657	1	1	0	0	0	0	copy fasta	AFF1	chr4	86930011	87146039
AFF1_chr4_86930011_87146039	0/0	c0030	3657	1	1	0	0	0	0	copy fasta	AFF1	chr4	86930011	87146039
AFF1_chr4_86930011_87146039	0/0	c0031	3657	1	0	0	1	0	0	copy fasta	AFF1	chr4	86930011	87146039
AFF1_chr4_86930011_87146039	0/0	c0032	3657	1	1	0	0	0	0	copy fasta	AFF1	chr4	86930011	87146039
AFF2_chrX_148495617_149005663	1/1	c0001	3936	128	22	23	61	5	15	copy fasta	AFF2	chrX	148495617	149005663
AFF2_chrX_148495617_149005663	0/0	c0002	3936	26	26	0	0	0	0	copy fasta	AFF2	chrX	148495617	149005663
AFF2_chrX_148495617_149005663	0/0	c0003	3936	6	6	0	0	0	0	copy fasta	AFF2	chrX	148495617	149005663
AFF2_chrX_148495617_149005663	0/0	c0004	3936	3	3	0	0	0	0	copy fasta	AFF2	chrX	148495617	149005663
AFF2_chrX_148495617_149005663	0/0	c0005	3936	2	2	0	0	0	0	copy fasta	AFF2	chrX	148495617	149005663
AFF2_chrX_148495617_149005663	0/0	c0006	3936	1	0	0	1	0	0	copy fasta	AFF2	chrX	148495617	149005663
AFF2_chrX_148495617_149005663	0/0	c0007	3936	1	1	0	0	0	0	copy fasta	AFF2	chrX	148495617	149005663
AFF2_chrX_148495617_149005663	0/0	c0008	3937	1	0	0	1	0	0	copy fasta	AFF2	chrX	148495617	149005663
AFF2_chrX_148495617_149005663	0/0	c0009	3936	1	0	1	0	0	0	copy fasta	AFF2	chrX	148495617	149005663
AFF3_chr2_99540419_100147590	1/0	c0001	3681	44	28	8	4	2	1	copy fasta	AFF3	chr2	99540419	100147590
AFF3_chr2_99540419_100147590	0/0	c0002	3681	11	4	3	0	0	4	copy fasta	AFF3	chr2	99540419	100147590
AFF3_chr2_99540419_100147590	0/1	c0003	3681	11	1	4	1	1	3	copy fasta	AFF3	chr2	99540419	100147590
AFF3_chr2_99540419_100147590	0/0	c0004	3681	8	8	0	0	0	0	copy fasta	AFF3	chr2	99540419	100147590
AFF3_chr2_99540419_100147590	0/0	c0005	3681	7	3	2	0	1	1	copy fasta	AFF3	chr2	99540419	100147590
AFF3_chr2_99540419_100147590	0/0	c0006	3675	6	1	2	2	0	1	copy fasta	AFF3	chr2	99540419	100147590
AFF3_chr2_99540419_100147590	0/0	c0007	3681	4	4	0	0	0	0	copy fasta	AFF3	chr2	99540419	100147590
AFF3_chr2_99540419_100147590	0/0	c0008	3681	2	2	0	0	0	0	copy fasta	AFF3	chr2	99540419	100147590
AFF3_chr2_99540419_100147590	0/0	c0009	3681	2	2	0	0	0	0	copy fasta	AFF3	chr2	99540419	100147590
AFF3_chr2_99540419_100147590	0/0	c0010	3681	1	1	0	0	0	0	copy fasta	AFF3	chr2	99540419	100147590
AFF3_chr2_99540419_100147590	0/0	c0011	3681	1	1	0	0	0	0	copy fasta	AFF3	chr2	99540419	100147590
AFF3_chr2_99540419_100147590	0/0	c0012	3681	1	0	0	1	0	0	copy fasta	AFF3	chr2	99540419	100147590
AFF3_chr2_99540419_100147590	0/0	c0013	3681	1	1	0	0	0	0	copy fasta	AFF3	chr2	99540419	100147590
AFF3_chr2_99540419_100147590	0/0	c0014	3681	1	0	1	0	0	0	copy fasta	AFF3	chr2	99540419	100147590
AFF4_chr5_132870395_132968634	1/1	c0001	3492	323	70	57	158	9	27	copy fasta	AFF4	chr5	132870395	132968634
AFF4_chr5_132870395_132968634	0/0	c0002	3492	42	2	7	22	3	8	copy fasta	AFF4	chr5	132870395	132968634
AFF4_chr5_132870395_132968634	0/0	c0003	3492	5	5	0	0	0	0	copy fasta	AFF4	chr5	132870395	132968634
AFF4_chr5_132870395_132968634	0/0	c0004	3492	5	5	0	0	0	0	copy fasta	AFF4	chr5	132870395	132968634
AFF4_chr5_132870395_132968634	0/0	c0005	3492	4	4	0	0	0	0	copy fasta	AFF4	chr5	132870395	132968634
AFF4_chr5_132870395_132968634	0/0	c0006	3492	2	0	2	0	0	0	copy fasta	AFF4	chr5	132870395	132968634
AFF4_chr5_132870395_132968634	0/0	c0007	3492	2	0	0	2	0	0	copy fasta	AFF4	chr5	132870395	132968634
AFF4_chr5_132870395_132968634	0/0	c0008	3492	2	1	0	1	0	0	copy fasta	AFF4	chr5	132870395	132968634
AFF4_chr5_132870395_132968634	0/0	c0009	3492	1	1	0	0	0	0	copy fasta	AFF4	chr5	132870395	132968634
AFF4_chr5_132870395_132968634	0/0	c0010	3492	1	0	0	1	0	0	copy fasta	AFF4	chr5	132870395	132968634
AFF4_chr5_132870395_132968634	0/0	c0011	3492	1	0	1	0	0	0	copy fasta	AFF4	chr5	132870395	132968634
AFF4_chr5_132870395_132968634	0/0	c0012	3492	1	0	0	1	0	0	copy fasta	AFF4	chr5	132870395	132968634
AFF4_chr5_132870395_132968634	0/0	c0013	3492	1	0	0	0	0	1	copy fasta	AFF4	chr5	132870395	132968634
AFF4_chr5_132870395_132968634	0/0	c0014	3492	1	0	0	1	0	0	copy fasta	AFF4	chr5	132870395	132968634
AFF4_chr5_132870395_132968634	0/0	c0015	3492	1	0	1	0	0	0	copy fasta	AFF4	chr5	132870395	132968634
AFG3L2_chr18_12323944_12382227	0/1	c0001	2394	186	36	44	70	11	24	copy fasta	AFG3L2	chr18	12323944	12382227
AFG3L2_chr18_12323944_12382227	1/0	c0002	2394	155	30	32	81	3	8	copy fasta	AFG3L2	chr18	12323944	12382227
AFG3L2_chr18_12323944_12382227	0/0	c0003	2394	30	24	2	4	0	0	copy fasta	AFG3L2	chr18	12323944	12382227
AFG3L2_chr18_12323944_12382227	0/0	c0004	2394	2	0	0	0	0	2	copy fasta	AFG3L2	chr18	12323944	12382227
AFG3L2_chr18_12323944_12382227	0/0	c0005	2394	1	0	0	0	0	1	copy fasta	AFG3L2	chr18	12323944	12382227
AFG3L2_chr18_12323944_12382227	0/0	c0006	2394	1	0	0	1	0	0	copy fasta	AFG3L2	chr18	12323944	12382227
AFG3L2_chr18_12323944_12382227	0/0	c0007	2394	1	0	0	0	0	1	copy fasta	AFG3L2	chr18	12323944	12382227
AFMID_chr17_78182362_78212702	1/1	c0001	912	367	74	67	168	13	43	copy fasta	AFMID	chr17	78182362	78212702