Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
AFTPH_chr2_64519328_64598005	0/0	c0005	2811	3	0	0	0	2	1	copy fasta	AFTPH	chr2	64519328	64598005
AFTPH_chr2_64519328_64598005	0/0	c0006	2811	2	0	0	2	0	0	copy fasta	AFTPH	chr2	64519328	64598005
AFTPH_chr2_64519328_64598005	0/0	c0007	2811	2	0	0	2	0	0	copy fasta	AFTPH	chr2	64519328	64598005
AFTPH_chr2_64519328_64598005	0/0	c0008	2811	1	1	0	0	0	0	copy fasta	AFTPH	chr2	64519328	64598005
AFTPH_chr2_64519328_64598005	0/0	c0009	2811	1	0	0	0	0	1	copy fasta	AFTPH	chr2	64519328	64598005
AFTPH_chr2_64519328_64598005	0/0	c0010	2811	1	1	0	0	0	0	copy fasta	AFTPH	chr2	64519328	64598005
AFTPH_chr2_64519328_64598005	0/0	c0011	2811	1	1	0	0	0	0	copy fasta	AFTPH	chr2	64519328	64598005
AFTPH_chr2_64519328_64598005	0/0	c0012	2811	1	0	1	0	0	0	copy fasta	AFTPH	chr2	64519328	64598005
AFTPH_chr2_64519328_64598005	0/0	c0013	2811	1	1	0	0	0	0	copy fasta	AFTPH	chr2	64519328	64598005
AFTPH_chr2_64519328_64598005	0/0	c0014	2811	1	0	0	0	0	1	copy fasta	AFTPH	chr2	64519328	64598005
AFTPH_chr2_64519328_64598005	0/0	c0015	2811	1	0	1	0	0	0	copy fasta	AFTPH	chr2	64519328	64598005
AFTPH_chr2_64519328_64598005	0/0	c0016	2811	1	0	0	1	0	0	copy fasta	AFTPH	chr2	64519328	64598005
AFTPH_chr2_64519328_64598005	0/0	c0017	2811	1	1	0	0	0	0	copy fasta	AFTPH	chr2	64519328	64598005
AGAP1_chr2_235489043_236136793	0/0	c0001	2574	26	23	1	2	0	0	copy fasta	AGAP1	chr2	235489043	236136793
AGAP1_chr2_235489043_236136793	0/0	c0002	2574	20	13	2	4	0	1	copy fasta	AGAP1	chr2	235489043	236136793
AGAP1_chr2_235489043_236136793	0/0	c0003	2574	9	9	0	0	0	0	copy fasta	AGAP1	chr2	235489043	236136793
AGAP1_chr2_235489043_236136793	0/0	c0004	2574	9	0	9	0	0	0	copy fasta	AGAP1	chr2	235489043	236136793
AGAP1_chr2_235489043_236136793	0/0	c0005	2574	7	6	1	0	0	0	copy fasta	AGAP1	chr2	235489043	236136793
AGAP1_chr2_235489043_236136793	0/0	c0006	2574	6	0	4	2	0	0	copy fasta	AGAP1	chr2	235489043	236136793
AGAP1_chr2_235489043_236136793	0/0	c0007	2574	5	0	1	2	0	2	copy fasta	AGAP1	chr2	235489043	236136793
AGAP1_chr2_235489043_236136793	0/0	c0008	2574	2	2	0	0	0	0	copy fasta	AGAP1	chr2	235489043	236136793
AGAP1_chr2_235489043_236136793	0/0	c0009	2574	2	2	0	0	0	0	copy fasta	AGAP1	chr2	235489043	236136793
AGAP1_chr2_235489043_236136793	0/0	c0010	2574	1	1	0	0	0	0	copy fasta	AGAP1	chr2	235489043	236136793
AGAP1_chr2_235489043_236136793	0/0	c0011	2574	1	1	0	0	0	0	copy fasta	AGAP1	chr2	235489043	236136793
AGAP1_chr2_235489043_236136793	0/0	c0012	2574	1	1	0	0	0	0	copy fasta	AGAP1	chr2	235489043	236136793
AGAP1_chr2_235489043_236136793	0/0	c0013	2574	1	1	0	0	0	0	copy fasta	AGAP1	chr2	235489043	236136793
AGAP1_chr2_235489043_236136793	0/0	c0014	2574	1	1	0	0	0	0	copy fasta	AGAP1	chr2	235489043	236136793
AGAP1_chr2_235489043_236136793	0/0	c0015	2574	1	1	0	0	0	0	copy fasta	AGAP1	chr2	235489043	236136793
AGAP1_chr2_235489043_236136793	0/0	c0016	2574	1	1	0	0	0	0	copy fasta	AGAP1	chr2	235489043	236136793
AGAP1_chr2_235489043_236136793	0/0	c0017	2574	1	0	0	0	0	1	copy fasta	AGAP1	chr2	235489043	236136793
AGAP1_chr2_235489043_236136793	0/0	c0018	2574	1	1	0	0	0	0	copy fasta	AGAP1	chr2	235489043	236136793
AGAP1_chr2_235489043_236136793	0/0	c0019	2574	1	1	0	0	0	0	copy fasta	AGAP1	chr2	235489043	236136793
AGAP1_chr2_235489043_236136793	0/0	c0020	2574	1	1	0	0	0	0	copy fasta	AGAP1	chr2	235489043	236136793
AGAP1_chr2_235489043_236136793	0/0	c0021	2574	1	1	0	0	0	0	copy fasta	AGAP1	chr2	235489043	236136793
AGAP2_chr12_57720197_57743742	1/0	c0001	3579	267	74	43	113	8	28	copy fasta	AGAP2	chr12	57720197	57743742
AGAP2_chr12_57720197_57743742	0/1	c0002	3579	60	2	22	18	4	13	copy fasta	AGAP2	chr12	57720197	57743742
AGAP2_chr12_57720197_57743742	0/0	c0003	3579	8	8	0	0	0	0	copy fasta	AGAP2	chr12	57720197	57743742
AGAP2_chr12_57720197_57743742	0/0	c0004	3579	7	0	0	7	0	0	copy fasta	AGAP2	chr12	57720197	57743742
AGAP2_chr12_57720197_57743742	0/0	c0005	3580	6	0	3	3	0	0	copy fasta	AGAP2	chr12	57720197	57743742
AGAP2_chr12_57720197_57743742	0/0	c0006	3579	6	4	2	0	0	0	copy fasta	AGAP2	chr12	57720197	57743742
AGAP2_chr12_57720197_57743742	0/0	c0007	3580	3	0	0	2	0	1	copy fasta	AGAP2	chr12	57720197	57743742
AGAP2_chr12_57720197_57743742	0/0	c0008	3579	3	0	0	3	0	0	copy fasta	AGAP2	chr12	57720197	57743742
AGAP2_chr12_57720197_57743742	0/0	c0009	3580	2	1	1	0	0	0	copy fasta	AGAP2	chr12	57720197	57743742
AGAP2_chr12_57720197_57743742	0/0	c0010	3579	2	2	0	0	0	0	copy fasta	AGAP2	chr12	57720197	57743742
AGAP2_chr12_57720197_57743742	0/0	c0011	3579	2	0	0	2	0	0	copy fasta	AGAP2	chr12	57720197	57743742
AGAP2_chr12_57720197_57743742	0/0	c0012	3579	1	1	0	0	0	0	copy fasta	AGAP2	chr12	57720197	57743742
AGAP2_chr12_57720197_57743742	0/0	c0013	3579	1	0	0	1	0	0	copy fasta	AGAP2	chr12	57720197	57743742
AGAP2_chr12_57720197_57743742	0/0	c0014	3579	1	0	0	0	0	1	copy fasta	AGAP2	chr12	57720197	57743742
AGAP2_chr12_57720197_57743742	0/0	c0015	3579	1	1	0	0	0	0	copy fasta	AGAP2	chr12	57720197	57743742
AGAP2_chr12_57720197_57743742	0/0	c0016	3579	1	0	0	0	1	0	copy fasta	AGAP2	chr12	57720197	57743742