Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
AGBL2_chr11_47654591_47720369	0/0	c0011	2709	1	1	0	0	0	0	copy fasta	AGBL2	chr11	47654591	47720369
AGBL2_chr11_47654591_47720369	0/0	c0012	2709	1	1	0	0	0	0	copy fasta	AGBL2	chr11	47654591	47720369
AGBL2_chr11_47654591_47720369	0/0	c0013	2709	1	0	0	1	0	0	copy fasta	AGBL2	chr11	47654591	47720369
AGBL2_chr11_47654591_47720369	0/0	c0014	2709	1	0	1	0	0	0	copy fasta	AGBL2	chr11	47654591	47720369
AGBL2_chr11_47654591_47720369	0/0	c0015	2709	1	1	0	0	0	0	copy fasta	AGBL2	chr11	47654591	47720369
AGBL2_chr11_47654591_47720369	0/0	c0016	2709	1	0	0	1	0	0	copy fasta	AGBL2	chr11	47654591	47720369
AGBL2_chr11_47654591_47720369	0/0	c0017	2709	1	1	0	0	0	0	copy fasta	AGBL2	chr11	47654591	47720369
AGBL3_chr7_134981508_135140778	0/0	c0001	2763	195	27	39	89	9	31	copy fasta	AGBL3	chr7	134981508	135140778
AGBL3_chr7_134981508_135140778	0/1	c0002	2763	48	18	11	10	2	6	copy fasta	AGBL3	chr7	134981508	135140778
AGBL3_chr7_134981508_135140778	0/0	c0003	2763	29	15	1	11	0	2	copy fasta	AGBL3	chr7	134981508	135140778
AGBL3_chr7_134981508_135140778	1/0	c0004	2763	19	16	2	0	0	0	copy fasta	AGBL3	chr7	134981508	135140778
AGBL3_chr7_134981508_135140778	0/0	c0005	2763	11	1	10	0	0	0	copy fasta	AGBL3	chr7	134981508	135140778
AGBL3_chr7_134981508_135140778	0/0	c0006	2763	2	2	0	0	0	0	copy fasta	AGBL3	chr7	134981508	135140778
AGBL3_chr7_134981508_135140778	0/0	c0007	2763	2	2	0	0	0	0	copy fasta	AGBL3	chr7	134981508	135140778
AGBL3_chr7_134981508_135140778	0/0	c0008	2763	2	2	0	0	0	0	copy fasta	AGBL3	chr7	134981508	135140778
AGBL3_chr7_134981508_135140778	0/0	c0009	2763	1	0	0	1	0	0	copy fasta	AGBL3	chr7	134981508	135140778
AGBL3_chr7_134981508_135140778	0/0	c0010	2763	1	1	0	0	0	0	copy fasta	AGBL3	chr7	134981508	135140778
AGBL3_chr7_134981508_135140778	0/0	c0011	2763	1	1	0	0	0	0	copy fasta	AGBL3	chr7	134981508	135140778
AGBL3_chr7_134981508_135140778	0/0	c0012	2763	1	1	0	0	0	0	copy fasta	AGBL3	chr7	134981508	135140778
AGBL3_chr7_134981508_135140778	0/0	c0013	2763	1	0	0	1	0	0	copy fasta	AGBL3	chr7	134981508	135140778
AGBL3_chr7_134981508_135140778	0/0	c0014	2763	1	0	0	0	1	0	copy fasta	AGBL3	chr7	134981508	135140778
AGBL3_chr7_134981508_135140778	0/0	c0015	2763	1	0	0	0	0	1	copy fasta	AGBL3	chr7	134981508	135140778
AGBL3_chr7_134981508_135140778	0/0	c0016	2763	1	1	0	0	0	0	copy fasta	AGBL3	chr7	134981508	135140778
AGBL3_chr7_134981508_135140778	0/0	c0017	2763	1	1	0	0	0	0	copy fasta	AGBL3	chr7	134981508	135140778
AGBL3_chr7_134981508_135140778	0/0	c0018	2763	1	0	1	0	0	0	copy fasta	AGBL3	chr7	134981508	135140778
AGBL3_chr7_134981508_135140778	0/0	c0019	2763	1	1	0	0	0	0	copy fasta	AGBL3	chr7	134981508	135140778
AGBL3_chr7_134981508_135140778	0/0	c0020	2763	1	1	0	0	0	0	copy fasta	AGBL3	chr7	134981508	135140778
AGBL4_chr1_48527854_50028954	0/0	c0001	1512	67	33	10	17	0	7	copy fasta	AGBL4	chr1	48527854	50028954
AGBL4_chr1_48527854_50028954	0/0	c0002	1512	14	0	2	9	0	3	copy fasta	AGBL4	chr1	48527854	50028954
AGBL4_chr1_48527854_50028954	0/0	c0003	1512	8	7	1	0	0	0	copy fasta	AGBL4	chr1	48527854	50028954
AGBL4_chr1_48527854_50028954	0/0	c0004	1512	8	7	1	0	0	0	copy fasta	AGBL4	chr1	48527854	50028954
AGBL4_chr1_48527854_50028954	0/0	c0005	1512	2	2	0	0	0	0	copy fasta	AGBL4	chr1	48527854	50028954
AGBL4_chr1_48527854_50028954	0/0	c0006	1512	1	1	0	0	0	0	copy fasta	AGBL4	chr1	48527854	50028954
AGBL4_chr1_48527854_50028954	0/0	c0007	1512	1	1	0	0	0	0	copy fasta	AGBL4	chr1	48527854	50028954
AGBL4_chr1_48527854_50028954	0/0	c0008	1512	1	1	0	0	0	0	copy fasta	AGBL4	chr1	48527854	50028954
AGBL4_chr1_48527854_50028954	0/0	c0009	1512	1	1	0	0	0	0	copy fasta	AGBL4	chr1	48527854	50028954
AGBL4_chr1_48527854_50028954	0/0	c0010	1512	1	1	0	0	0	0	copy fasta	AGBL4	chr1	48527854	50028954
AGBL5_chr2_27046668_27075618	1/1	c0001	2661	306	76	65	116	15	32	copy fasta	AGBL5	chr2	27046668	27075618
AGBL5_chr2_27046668_27075618	0/0	c0002	2661	8	6	2	0	0	0	copy fasta	AGBL5	chr2	27046668	27075618
AGBL5_chr2_27046668_27075618	0/0	c0003	2661	4	3	1	0	0	0	copy fasta	AGBL5	chr2	27046668	27075618
AGBL5_chr2_27046668_27075618	0/0	c0004	2661	3	3	0	0	0	0	copy fasta	AGBL5	chr2	27046668	27075618
AGBL5_chr2_27046668_27075618	0/0	c0005	2661	2	1	1	0	0	0	copy fasta	AGBL5	chr2	27046668	27075618
AGBL5_chr2_27046668_27075618	0/0	c0006	2661	2	0	0	2	0	0	copy fasta	AGBL5	chr2	27046668	27075618
AGBL5_chr2_27046668_27075618	0/0	c0007	2661	2	0	0	0	1	1	copy fasta	AGBL5	chr2	27046668	27075618
AGBL5_chr2_27046668_27075618	0/0	c0008	2661	1	0	0	1	0	0	copy fasta	AGBL5	chr2	27046668	27075618
AGBL5_chr2_27046668_27075618	0/0	c0009	2661	1	0	0	0	1	0	copy fasta	AGBL5	chr2	27046668	27075618
AGBL5_chr2_27046668_27075618	0/0	c0010	2661	1	0	0	1	0	0	copy fasta	AGBL5	chr2	27046668	27075618
AGBL5_chr2_27046668_27075618	0/0	c0011	2661	1	0	0	0	0	1	copy fasta	AGBL5	chr2	27046668	27075618
AGBL5_chr2_27046668_27075618	0/0	c0012	2661	1	1	0	0	0	0	copy fasta	AGBL5	chr2	27046668	27075618
AGBL5_chr2_27046668_27075618	0/0	c0013	2661	1	0	1	0	0	0	copy fasta	AGBL5	chr2	27046668	27075618