Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
AGBL5_chr2_27046668_27075618	0/0	c0014	2661	1	0	0	0	1	0	copy fasta	AGBL5	chr2	27046668	27075618
AGER_chr6_32175969_32189253	0/1	c0001	1215	381	79	71	174	15	41	copy fasta	AGER	chr6	32175969	32189253
AGER_chr6_32175969_32189253	0/0	c0002	1215	38	0	0	37	0	1	copy fasta	AGER	chr6	32175969	32189253
AGER_chr6_32175969_32189253	0/0	c0003	1215	23	15	6	1	1	0	copy fasta	AGER	chr6	32175969	32189253
AGER_chr6_32175969_32189253	0/0	c0004	1215	7	0	5	2	0	0	copy fasta	AGER	chr6	32175969	32189253
AGER_chr6_32175969_32189253	0/0	c0005	1215	4	1	2	0	0	1	copy fasta	AGER	chr6	32175969	32189253
AGER_chr6_32175969_32189253	0/0	c0006	1215	2	0	0	2	0	0	copy fasta	AGER	chr6	32175969	32189253
AGER_chr6_32175969_32189253	0/0	c0007	1215	2	0	0	2	0	0	copy fasta	AGER	chr6	32175969	32189253
AGER_chr6_32175969_32189253	0/0	c0008	1215	1	1	0	0	0	0	copy fasta	AGER	chr6	32175969	32189253
AGER_chr6_32175969_32189253	0/0	c0009	1215	1	1	0	0	0	0	copy fasta	AGER	chr6	32175969	32189253
AGER_chr6_32175969_32189253	0/0	c0010	1215	1	1	0	0	0	0	copy fasta	AGER	chr6	32175969	32189253
AGER_chr6_32175969_32189253	0/0	c0011	1215	1	0	0	0	0	1	copy fasta	AGER	chr6	32175969	32189253
AGFG1_chr2_227467156_227566217	0/1	c0001	1689	196	63	28	75	7	22	copy fasta	AGFG1	chr2	227467156	227566217
AGFG1_chr2_227467156_227566217	1/0	c0002	1689	78	14	8	43	2	10	copy fasta	AGFG1	chr2	227467156	227566217
AGFG1_chr2_227467156_227566217	0/0	c0003	1689	28	0	7	15	1	5	copy fasta	AGFG1	chr2	227467156	227566217
AGFG1_chr2_227467156_227566217	0/0	c0004	1689	21	12	1	5	0	3	copy fasta	AGFG1	chr2	227467156	227566217
AGFG1_chr2_227467156_227566217	0/0	c0005	1689	2	2	0	0	0	0	copy fasta	AGFG1	chr2	227467156	227566217
AGFG1_chr2_227467156_227566217	0/0	c0006	1689	1	0	0	1	0	0	copy fasta	AGFG1	chr2	227467156	227566217
AGFG1_chr2_227467156_227566217	0/0	c0007	1689	1	1	0	0	0	0	copy fasta	AGFG1	chr2	227467156	227566217
AGFG1_chr2_227467156_227566217	0/0	c0008	1689	1	0	0	1	0	0	copy fasta	AGFG1	chr2	227467156	227566217
AGFG2_chr7_100534203_100573220	1/1	c0001	1446	172	29	26	75	10	30	copy fasta	AGFG2	chr7	100534203	100573220
AGFG2_chr7_100534203_100573220	0/0	c0002	1446	38	20	8	1	3	6	copy fasta	AGFG2	chr7	100534203	100573220
AGFG2_chr7_100534203_100573220	0/0	c0003	1446	13	13	0	0	0	0	copy fasta	AGFG2	chr7	100534203	100573220
AGFG2_chr7_100534203_100573220	0/0	c0004	1446	10	0	0	8	1	1	copy fasta	AGFG2	chr7	100534203	100573220
AGFG2_chr7_100534203_100573220	0/0	c0005	1446	3	3	0	0	0	0	copy fasta	AGFG2	chr7	100534203	100573220
AGFG2_chr7_100534203_100573220	0/0	c0006	1446	1	0	0	0	0	1	copy fasta	AGFG2	chr7	100534203	100573220
AGFG2_chr7_100534203_100573220	0/0	c0007	1446	1	1	0	0	0	0	copy fasta	AGFG2	chr7	100534203	100573220
AGFG2_chr7_100534203_100573220	0/0	c0008	1446	1	0	1	0	0	0	copy fasta	AGFG2	chr7	100534203	100573220
AGFG2_chr7_100534203_100573220	0/0	c0009	1446	1	1	0	0	0	0	copy fasta	AGFG2	chr7	100534203	100573220
AGFG2_chr7_100534203_100573220	0/0	c0010	1446	1	0	0	1	0	0	copy fasta	AGFG2	chr7	100534203	100573220
AGFG2_chr7_100534203_100573220	0/0	c0011	1446	1	0	1	0	0	0	copy fasta	AGFG2	chr7	100534203	100573220
AGFG2_chr7_100534203_100573220	0/0	c0012	1446	1	0	0	0	0	1	copy fasta	AGFG2	chr7	100534203	100573220
AGFG2_chr7_100534203_100573220	0/0	c0013	1446	1	1	0	0	0	0	copy fasta	AGFG2	chr7	100534203	100573220
AGFG2_chr7_100534203_100573220	0/0	c0014	1446	1	0	0	0	0	1	copy fasta	AGFG2	chr7	100534203	100573220
AGFG2_chr7_100534203_100573220	0/0	c0015	1446	1	0	0	1	0	0	copy fasta	AGFG2	chr7	100534203	100573220
AGGF1_chr5_77025404_77070234	1/1	c0001	2145	233	48	35	120	7	21	copy fasta	AGGF1	chr5	77025404	77070234
AGGF1_chr5_77025404_77070234	0/0	c0002	2145	95	29	20	30	3	13	copy fasta	AGGF1	chr5	77025404	77070234
AGGF1_chr5_77025404_77070234	0/0	c0003	2145	95	7	25	50	6	7	copy fasta	AGGF1	chr5	77025404	77070234
AGGF1_chr5_77025404_77070234	0/0	c0004	2145	6	4	0	0	0	2	copy fasta	AGGF1	chr5	77025404	77070234
AGGF1_chr5_77025404_77070234	0/0	c0005	2145	4	3	1	0	0	0	copy fasta	AGGF1	chr5	77025404	77070234
AGGF1_chr5_77025404_77070234	0/0	c0006	2157	1	0	0	0	0	1	copy fasta	AGGF1	chr5	77025404	77070234
AGGF1_chr5_77025404_77070234	0/0	c0007	2145	1	0	1	0	0	0	copy fasta	AGGF1	chr5	77025404	77070234
AGGF1_chr5_77025404_77070234	0/0	c0008	2145	1	0	0	1	0	0	copy fasta	AGGF1	chr5	77025404	77070234
AGGF1_chr5_77025404_77070234	0/0	c0009	2145	1	1	0	0	0	0	copy fasta	AGGF1	chr5	77025404	77070234
AGGF1_chr5_77025404_77070234	0/0	c0010	2145	1	0	0	1	0	0	copy fasta	AGGF1	chr5	77025404	77070234
AGK_chr7_141546410_141660244	1/1	c0001	1269	268	68	43	115	8	32	copy fasta	AGK	chr7	141546410	141660244
AGK_chr7_141546410_141660244	0/0	c0002	1269	3	2	1	0	0	0	copy fasta	AGK	chr7	141546410	141660244
AGK_chr7_141546410_141660244	0/0	c0003	1269	1	1	0	0	0	0	copy fasta	AGK	chr7	141546410	141660244
AGK_chr7_141546410_141660244	0/0	c0004	1269	1	0	0	1	0	0	copy fasta	AGK	chr7	141546410	141660244
AGK_chr7_141546410_141660244	0/0	c0005	1269	1	1	0	0	0	0	copy fasta	AGK	chr7	141546410	141660244