Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
AGMAT_chr1_15566699_15590051	0/0	c0016	1059	1	0	1	0	0	0	copy fasta	AGMAT	chr1	15566699	15590051
AGMAT_chr1_15566699_15590051	0/0	c0017	1059	1	0	0	1	0	0	copy fasta	AGMAT	chr1	15566699	15590051
AGMAT_chr1_15566699_15590051	0/0	c0018	1059	1	0	0	1	0	0	copy fasta	AGMAT	chr1	15566699	15590051
AGMAT_chr1_15566699_15590051	0/0	c0019	1059	1	0	1	0	0	0	copy fasta	AGMAT	chr1	15566699	15590051
AGMO_chr7_15195317_15567015	1/1	c0001	1338	168	40	40	51	12	23	copy fasta	AGMO	chr7	15195317	15567015
AGMO_chr7_15195317_15567015	0/0	c0002	1338	13	12	1	0	0	0	copy fasta	AGMO	chr7	15195317	15567015
AGMO_chr7_15195317_15567015	0/0	c0003	1338	11	7	2	0	0	2	copy fasta	AGMO	chr7	15195317	15567015
AGMO_chr7_15195317_15567015	0/0	c0004	1338	6	6	0	0	0	0	copy fasta	AGMO	chr7	15195317	15567015
AGMO_chr7_15195317_15567015	0/0	c0005	1338	6	4	2	0	0	0	copy fasta	AGMO	chr7	15195317	15567015
AGMO_chr7_15195317_15567015	0/0	c0006	1338	5	5	0	0	0	0	copy fasta	AGMO	chr7	15195317	15567015
AGMO_chr7_15195317_15567015	0/0	c0007	1338	4	4	0	0	0	0	copy fasta	AGMO	chr7	15195317	15567015
AGMO_chr7_15195317_15567015	0/0	c0008	1338	3	3	0	0	0	0	copy fasta	AGMO	chr7	15195317	15567015
AGMO_chr7_15195317_15567015	0/0	c0009	1338	2	2	0	0	0	0	copy fasta	AGMO	chr7	15195317	15567015
AGMO_chr7_15195317_15567015	0/0	c0010	1338	2	1	1	0	0	0	copy fasta	AGMO	chr7	15195317	15567015
AGMO_chr7_15195317_15567015	0/0	c0011	1338	2	2	0	0	0	0	copy fasta	AGMO	chr7	15195317	15567015
AGMO_chr7_15195317_15567015	0/0	c0012	1338	2	2	0	0	0	0	copy fasta	AGMO	chr7	15195317	15567015
AGMO_chr7_15195317_15567015	0/0	c0013	1338	1	0	0	1	0	0	copy fasta	AGMO	chr7	15195317	15567015
AGMO_chr7_15195317_15567015	0/0	c0014	1338	1	1	0	0	0	0	copy fasta	AGMO	chr7	15195317	15567015
AGMO_chr7_15195317_15567015	0/0	c0015	1338	1	0	0	1	0	0	copy fasta	AGMO	chr7	15195317	15567015
AGMO_chr7_15195317_15567015	0/0	c0016	1338	1	0	0	0	0	1	copy fasta	AGMO	chr7	15195317	15567015
AGMO_chr7_15195317_15567015	0/0	c0017	1338	1	0	0	1	0	0	copy fasta	AGMO	chr7	15195317	15567015
AGMO_chr7_15195317_15567015	0/0	c0018	1338	1	1	0	0	0	0	copy fasta	AGMO	chr7	15195317	15567015
AGMO_chr7_15195317_15567015	0/0	c0019	1338	1	1	0	0	0	0	copy fasta	AGMO	chr7	15195317	15567015
AGMO_chr7_15195317_15567015	0/0	c0020	1338	1	1	0	0	0	0	copy fasta	AGMO	chr7	15195317	15567015
AGMO_chr7_15195317_15567015	0/0	c0021	1338	1	1	0	0	0	0	copy fasta	AGMO	chr7	15195317	15567015
AGMO_chr7_15195317_15567015	0/0	c0022	1338	1	1	0	0	0	0	copy fasta	AGMO	chr7	15195317	15567015
AGMO_chr7_15195317_15567015	0/0	c0023	1338	1	1	0	0	0	0	copy fasta	AGMO	chr7	15195317	15567015
AGMO_chr7_15195317_15567015	0/0	c0024	1338	1	1	0	0	0	0	copy fasta	AGMO	chr7	15195317	15567015
AGO1_chr1_35878209_35935532	1/1	c0001	2574	170	57	34	49	7	21	copy fasta	AGO1	chr1	35878209	35935532
AGO1_chr1_35878209_35935532	0/0	c0002	2574	99	28	20	46	1	4	copy fasta	AGO1	chr1	35878209	35935532
AGO1_chr1_35878209_35935532	0/0	c0003	2574	3	0	0	0	0	3	copy fasta	AGO1	chr1	35878209	35935532
AGO1_chr1_35878209_35935532	0/0	c0004	2574	2	1	0	1	0	0	copy fasta	AGO1	chr1	35878209	35935532
AGO1_chr1_35878209_35935532	0/0	c0005	2574	1	0	0	1	0	0	copy fasta	AGO1	chr1	35878209	35935532
AGO1_chr1_35878209_35935532	0/0	c0006	2574	1	1	0	0	0	0	copy fasta	AGO1	chr1	35878209	35935532
AGO1_chr1_35878209_35935532	0/0	c0007	2574	1	0	0	1	0	0	copy fasta	AGO1	chr1	35878209	35935532
AGO1_chr1_35878209_35935532	0/0	c0008	2574	1	1	0	0	0	0	copy fasta	AGO1	chr1	35878209	35935532
AGO2_chr8_140515156_140640633	0/1	c0001	2580	127	19	31	55	3	18	copy fasta	AGO2	chr8	140515156	140640633
AGO2_chr8_140515156_140640633	0/0	c0002	2580	66	4	7	42	1	12	copy fasta	AGO2	chr8	140515156	140640633
AGO2_chr8_140515156_140640633	0/0	c0003	2580	59	36	6	10	1	6	copy fasta	AGO2	chr8	140515156	140640633
AGO2_chr8_140515156_140640633	0/0	c0004	2580	24	1	8	15	0	0	copy fasta	AGO2	chr8	140515156	140640633
AGO2_chr8_140515156_140640633	0/0	c0005	2580	20	18	1	0	0	1	copy fasta	AGO2	chr8	140515156	140640633
AGO2_chr8_140515156_140640633	1/0	c0006	2580	18	3	10	0	3	1	copy fasta	AGO2	chr8	140515156	140640633
AGO2_chr8_140515156_140640633	0/0	c0007	2580	5	4	1	0	0	0	copy fasta	AGO2	chr8	140515156	140640633
AGO2_chr8_140515156_140640633	0/0	c0008	2580	2	0	0	1	0	1	copy fasta	AGO2	chr8	140515156	140640633
AGO2_chr8_140515156_140640633	0/0	c0009	2580	2	2	0	0	0	0	copy fasta	AGO2	chr8	140515156	140640633
AGO2_chr8_140515156_140640633	0/0	c0010	2580	2	0	0	2	0	0	copy fasta	AGO2	chr8	140515156	140640633
AGO2_chr8_140515156_140640633	0/0	c0011	2580	2	1	1	0	0	0	copy fasta	AGO2	chr8	140515156	140640633
AGO2_chr8_140515156_140640633	0/0	c0012	2580	2	2	0	0	0	0	copy fasta	AGO2	chr8	140515156	140640633
AGO2_chr8_140515156_140640633	0/0	c0013	2580	1	0	0	1	0	0	copy fasta	AGO2	chr8	140515156	140640633
AGO2_chr8_140515156_140640633	0/0	c0014	2580	1	0	0	0	0	1	copy fasta	AGO2	chr8	140515156	140640633