Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
AGO2_chr8_140515156_140640633	0/0	c0015	2580	1	0	0	0	0	1	copy fasta	AGO2	chr8	140515156	140640633
AGO2_chr8_140515156_140640633	0/0	c0016	2580	1	0	0	0	0	1	copy fasta	AGO2	chr8	140515156	140640633
AGO2_chr8_140515156_140640633	0/0	c0017	2580	1	1	0	0	0	0	copy fasta	AGO2	chr8	140515156	140640633
AGO2_chr8_140515156_140640633	0/0	c0018	2580	1	1	0	0	0	0	copy fasta	AGO2	chr8	140515156	140640633
AGO2_chr8_140515156_140640633	0/0	c0019	2580	1	0	0	1	0	0	copy fasta	AGO2	chr8	140515156	140640633
AGO2_chr8_140515156_140640633	0/0	c0020	2580	1	0	1	0	0	0	copy fasta	AGO2	chr8	140515156	140640633
AGO2_chr8_140515156_140640633	0/0	c0021	2580	1	0	0	1	0	0	copy fasta	AGO2	chr8	140515156	140640633
AGO3_chr1_35926105_36077500	1/1	c0001	2583	243	72	44	103	6	16	copy fasta	AGO3	chr1	35926105	36077500
AGO3_chr1_35926105_36077500	0/0	c0002	2583	7	7	0	0	0	0	copy fasta	AGO3	chr1	35926105	36077500
AGO3_chr1_35926105_36077500	0/0	c0003	2583	4	4	0	0	0	0	copy fasta	AGO3	chr1	35926105	36077500
AGO3_chr1_35926105_36077500	0/0	c0004	2583	2	2	0	0	0	0	copy fasta	AGO3	chr1	35926105	36077500
AGO3_chr1_35926105_36077500	0/0	c0005	2583	1	1	0	0	0	0	copy fasta	AGO3	chr1	35926105	36077500
AGO3_chr1_35926105_36077500	0/0	c0006	2583	1	0	0	1	0	0	copy fasta	AGO3	chr1	35926105	36077500
AGO4_chr1_35803016_35862890	1/1	c0001	2586	176	75	26	59	3	11	copy fasta	AGO4	chr1	35803016	35862890
AGO4_chr1_35803016_35862890	0/0	c0002	2586	86	10	16	42	7	11	copy fasta	AGO4	chr1	35803016	35862890
AGO4_chr1_35803016_35862890	0/0	c0003	2586	6	6	0	0	0	0	copy fasta	AGO4	chr1	35803016	35862890
AGO4_chr1_35803016_35862890	0/0	c0004	2586	1	0	0	1	0	0	copy fasta	AGO4	chr1	35803016	35862890
AGO4_chr1_35803016_35862890	0/0	c0005	2586	1	1	0	0	0	0	copy fasta	AGO4	chr1	35803016	35862890
AGPAT1_chr6_32163212_32181084	0/1	c0001	852	439	91	79	208	16	44	copy fasta	AGPAT1	chr6	32163212	32181084
AGPAT1_chr6_32163212_32181084	0/0	c0002	852	2	2	0	0	0	0	copy fasta	AGPAT1	chr6	32163212	32181084
AGPAT1_chr6_32163212_32181084	0/0	c0003	852	1	1	0	0	0	0	copy fasta	AGPAT1	chr6	32163212	32181084
AGPAT1_chr6_32163212_32181084	0/0	c0004	852	1	1	0	0	0	0	copy fasta	AGPAT1	chr6	32163212	32181084
AGPAT1_chr6_32163212_32181084	0/0	c0005	852	1	1	0	0	0	0	copy fasta	AGPAT1	chr6	32163212	32181084
AGPAT1_chr6_32163212_32181084	0/0	c0006	852	1	0	1	0	0	0	copy fasta	AGPAT1	chr6	32163212	32181084
AGPAT2_chr9_136668143_136692457	1/1	c0001	837	328	86	59	135	11	35	copy fasta	AGPAT2	chr9	136668143	136692457
AGPAT2_chr9_136668143_136692457	0/0	c0002	840	17	0	9	5	1	2	copy fasta	AGPAT2	chr9	136668143	136692457
AGPAT2_chr9_136668143_136692457	0/0	c0003	837	9	0	0	9	0	0	copy fasta	AGPAT2	chr9	136668143	136692457
AGPAT2_chr9_136668143_136692457	0/0	c0004	837	6	3	3	0	0	0	copy fasta	AGPAT2	chr9	136668143	136692457
AGPAT2_chr9_136668143_136692457	0/0	c0005	837	2	1	1	0	0	0	copy fasta	AGPAT2	chr9	136668143	136692457
AGPAT2_chr9_136668143_136692457	0/0	c0006	837	2	2	0	0	0	0	copy fasta	AGPAT2	chr9	136668143	136692457
AGPAT2_chr9_136668143_136692457	0/0	c0007	840	1	0	1	0	0	0	copy fasta	AGPAT2	chr9	136668143	136692457
AGPAT2_chr9_136668143_136692457	0/0	c0008	837	1	1	0	0	0	0	copy fasta	AGPAT2	chr9	136668143	136692457
AGPAT2_chr9_136668143_136692457	0/0	c0009	837	1	1	0	0	0	0	copy fasta	AGPAT2	chr9	136668143	136692457
AGPAT2_chr9_136668143_136692457	0/0	c0010	837	1	0	1	0	0	0	copy fasta	AGPAT2	chr9	136668143	136692457
AGPAT2_chr9_136668143_136692457	0/0	c0011	837	1	1	0	0	0	0	copy fasta	AGPAT2	chr9	136668143	136692457
AGPAT2_chr9_136668143_136692457	0/0	c0012	837	1	0	0	1	0	0	copy fasta	AGPAT2	chr9	136668143	136692457
AGPAT2_chr9_136668143_136692457	0/0	c0013	837	1	0	0	0	0	1	copy fasta	AGPAT2	chr9	136668143	136692457
AGPAT2_chr9_136668143_136692457	0/0	c0014	837	1	0	0	1	0	0	copy fasta	AGPAT2	chr9	136668143	136692457
AGPAT2_chr9_136668143_136692457	0/0	c0015	837	1	1	0	0	0	0	copy fasta	AGPAT2	chr9	136668143	136692457
AGPAT2_chr9_136668143_136692457	0/0	c0016	837	1	0	0	1	0	0	copy fasta	AGPAT2	chr9	136668143	136692457
AGPAT3_chr21_43860223_43992592	1/1	c0001	1131	332	85	70	124	15	36	copy fasta	AGPAT3	chr21	43860223	43992592
AGPAT3_chr21_43860223_43992592	0/0	c0002	1131	2	2	0	0	0	0	copy fasta	AGPAT3	chr21	43860223	43992592
AGPAT3_chr21_43860223_43992592	0/0	c0003	1131	2	0	0	0	0	2	copy fasta	AGPAT3	chr21	43860223	43992592
AGPAT3_chr21_43860223_43992592	0/0	c0004	1131	1	1	0	0	0	0	copy fasta	AGPAT3	chr21	43860223	43992592
AGPAT3_chr21_43860223_43992592	0/0	c0005	1131	1	0	0	0	0	1	copy fasta	AGPAT3	chr21	43860223	43992592
AGPAT3_chr21_43860223_43992592	0/0	c0006	1131	1	1	0	0	0	0	copy fasta	AGPAT3	chr21	43860223	43992592
AGPAT3_chr21_43860223_43992592	0/0	c0007	1131	1	0	0	0	1	0	copy fasta	AGPAT3	chr21	43860223	43992592
AGPAT3_chr21_43860223_43992592	0/0	c0008	1131	1	1	0	0	0	0	copy fasta	AGPAT3	chr21	43860223	43992592
AGPAT3_chr21_43860223_43992592	0/0	c0009	1131	1	0	0	0	0	1	copy fasta	AGPAT3	chr21	43860223	43992592
AGPAT4_chr6_161124967_161279061	1/1	c0001	1137	224	82	45	62	5	28	copy fasta	AGPAT4	chr6	161124967	161279061