Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
AGPAT4_chr6_161124967_161279061	0/0	c0002	1137	31	2	14	14	1	0	copy fasta	AGPAT4	chr6	161124967	161279061
AGPAT4_chr6_161124967_161279061	0/0	c0003	1137	7	4	1	2	0	0	copy fasta	AGPAT4	chr6	161124967	161279061
AGPAT4_chr6_161124967_161279061	0/0	c0004	1137	1	1	0	0	0	0	copy fasta	AGPAT4	chr6	161124967	161279061
AGPAT4_chr6_161124967_161279061	0/0	c0005	1137	1	1	0	0	0	0	copy fasta	AGPAT4	chr6	161124967	161279061
AGPAT5_chr8_6703642_6766503	1/1	c0001	1095	316	67	67	129	15	36	copy fasta	AGPAT5	chr8	6703642	6766503
AGPAT5_chr8_6703642_6766503	0/0	c0002	1095	60	0	6	48	0	6	copy fasta	AGPAT5	chr8	6703642	6766503
AGPAT5_chr8_6703642_6766503	0/0	c0003	1095	16	13	2	0	0	1	copy fasta	AGPAT5	chr8	6703642	6766503
AGPAT5_chr8_6703642_6766503	0/0	c0004	1095	4	1	1	0	0	2	copy fasta	AGPAT5	chr8	6703642	6766503
AGPAT5_chr8_6703642_6766503	0/0	c0005	1095	3	3	0	0	0	0	copy fasta	AGPAT5	chr8	6703642	6766503
AGPAT5_chr8_6703642_6766503	0/0	c0006	1095	2	0	0	2	0	0	copy fasta	AGPAT5	chr8	6703642	6766503
AGPAT5_chr8_6703642_6766503	0/0	c0007	1095	1	0	0	0	0	1	copy fasta	AGPAT5	chr8	6703642	6766503
AGPAT5_chr8_6703642_6766503	0/0	c0008	1095	1	0	0	1	0	0	copy fasta	AGPAT5	chr8	6703642	6766503
AGPAT5_chr8_6703642_6766503	0/0	c0009	1095	1	0	0	0	1	0	copy fasta	AGPAT5	chr8	6703642	6766503
AGPS_chr2_177387773_177548834	1/0	c0001	1977	239	65	40	114	2	17	copy fasta	AGPS	chr2	177387773	177548834
AGPS_chr2_177387773_177548834	0/1	c0002	1977	15	9	0	0	0	5	copy fasta	AGPS	chr2	177387773	177548834
AGPS_chr2_177387773_177548834	0/0	c0003	1977	3	3	0	0	0	0	copy fasta	AGPS	chr2	177387773	177548834
AGPS_chr2_177387773_177548834	0/0	c0004	1977	1	1	0	0	0	0	copy fasta	AGPS	chr2	177387773	177548834
AGR2_chr7_16786811_16809999	1/0	c0001	528	315	81	41	160	12	20	copy fasta	AGR2	chr7	16786811	16809999
AGR2_chr7_16786811_16809999	0/1	c0002	528	145	17	39	58	6	24	copy fasta	AGR2	chr7	16786811	16809999
AGR3_chr7_16854412_16886983	1/1	c0001	501	428	76	74	210	18	48	copy fasta	AGR3	chr7	16854412	16886983
AGR3_chr7_16854412_16886983	0/0	c0002	501	26	24	2	0	0	0	copy fasta	AGR3	chr7	16854412	16886983
AGR3_chr7_16854412_16886983	0/0	c0003	501	2	0	0	2	0	0	copy fasta	AGR3	chr7	16854412	16886983
AGR3_chr7_16854412_16886983	0/0	c0004	501	1	0	0	0	0	1	copy fasta	AGR3	chr7	16854412	16886983
AGR3_chr7_16854412_16886983	0/0	c0005	501	1	0	0	0	0	1	copy fasta	AGR3	chr7	16854412	16886983
AGRN_chr1_1015120_1061116	0/1	c0001	6138	91	3	24	55	0	8	copy fasta	AGRN	chr1	1015120	1061116
AGRN_chr1_1015120_1061116	1/0	c0002	6138	10	8	1	0	0	0	copy fasta	AGRN	chr1	1015120	1061116
AGRN_chr1_1015120_1061116	0/0	c0003	6138	5	0	0	5	0	0	copy fasta	AGRN	chr1	1015120	1061116
AGRN_chr1_1015120_1061116	0/0	c0004	6138	5	0	0	3	0	2	copy fasta	AGRN	chr1	1015120	1061116
AGRN_chr1_1015120_1061116	0/0	c0005	6138	5	5	0	0	0	0	copy fasta	AGRN	chr1	1015120	1061116
AGRN_chr1_1015120_1061116	0/0	c0006	6138	4	0	4	0	0	0	copy fasta	AGRN	chr1	1015120	1061116
AGRN_chr1_1015120_1061116	0/0	c0007	6138	4	3	1	0	0	0	copy fasta	AGRN	chr1	1015120	1061116
AGRN_chr1_1015120_1061116	0/0	c0008	6138	4	4	0	0	0	0	copy fasta	AGRN	chr1	1015120	1061116
AGRN_chr1_1015120_1061116	0/0	c0009	6138	3	3	0	0	0	0	copy fasta	AGRN	chr1	1015120	1061116
AGRN_chr1_1015120_1061116	0/0	c0010	6138	3	0	1	0	0	2	copy fasta	AGRN	chr1	1015120	1061116
AGRN_chr1_1015120_1061116	0/0	c0011	6138	3	3	0	0	0	0	copy fasta	AGRN	chr1	1015120	1061116
AGRN_chr1_1015120_1061116	0/0	c0012	6138	3	2	1	0	0	0	copy fasta	AGRN	chr1	1015120	1061116
AGRN_chr1_1015120_1061116	0/0	c0013	6138	3	3	0	0	0	0	copy fasta	AGRN	chr1	1015120	1061116
AGRN_chr1_1015120_1061116	0/0	c0014	6138	2	2	0	0	0	0	copy fasta	AGRN	chr1	1015120	1061116
AGRN_chr1_1015120_1061116	0/0	c0015	6138	2	0	1	1	0	0	copy fasta	AGRN	chr1	1015120	1061116
AGRN_chr1_1015120_1061116	0/0	c0016	6138	2	0	1	0	0	1	copy fasta	AGRN	chr1	1015120	1061116
AGRN_chr1_1015120_1061116	0/0	c0017	6129	2	2	0	0	0	0	copy fasta	AGRN	chr1	1015120	1061116
AGRN_chr1_1015120_1061116	0/0	c0018	6129	2	2	0	0	0	0	copy fasta	AGRN	chr1	1015120	1061116
AGRN_chr1_1015120_1061116	0/0	c0019	6138	2	0	0	2	0	0	copy fasta	AGRN	chr1	1015120	1061116
AGRN_chr1_1015120_1061116	0/0	c0020	6138	2	2	0	0	0	0	copy fasta	AGRN	chr1	1015120	1061116
AGRN_chr1_1015120_1061116	0/0	c0021	6138	2	0	0	2	0	0	copy fasta	AGRN	chr1	1015120	1061116
AGRN_chr1_1015120_1061116	0/0	c0022	6138	2	2	0	0	0	0	copy fasta	AGRN	chr1	1015120	1061116
AGRN_chr1_1015120_1061116	0/0	c0023	6138	2	0	0	2	0	0	copy fasta	AGRN	chr1	1015120	1061116
AGRN_chr1_1015120_1061116	0/0	c0024	6138	2	2	0	0	0	0	copy fasta	AGRN	chr1	1015120	1061116
AGRN_chr1_1015120_1061116	0/0	c0025	6138	2	1	0	1	0	0	copy fasta	AGRN	chr1	1015120	1061116
AGRN_chr1_1015120_1061116	0/0	c0026	6138	2	2	0	0	0	0	copy fasta	AGRN	chr1	1015120	1061116