JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ALG10_chr12_34017496_34033302	0/0	c0002	1422	16	15	1	0	0	0	copy fasta	ALG10	chr12	34017496	34033302
ALG10_chr12_34017496_34033302	0/0	c0003	1422	13	12	1	0	0	0	copy fasta	ALG10	chr12	34017496	34033302
ALG10_chr12_34017496_34033302	0/0	c0004	1422	5	4	1	0	0	0	copy fasta	ALG10	chr12	34017496	34033302
ALG10_chr12_34017496_34033302	0/0	c0005	1422	2	2	0	0	0	0	copy fasta	ALG10	chr12	34017496	34033302
ALG10_chr12_34017496_34033302	0/0	c0006	1422	1	1	0	0	0	0	copy fasta	ALG10	chr12	34017496	34033302
ALG10_chr12_34017496_34033302	0/0	c0007	1422	1	0	1	0	0	0	copy fasta	ALG10	chr12	34017496	34033302
ALG11_chr13_52007398_52038600	1/1	c0001	1479	338	74	61	153	13	35	copy fasta	ALG11	chr13	52007398	52038600
ALG11_chr13_52007398_52038600	0/0	c0002	1479	9	1	1	4	0	3	copy fasta	ALG11	chr13	52007398	52038600
ALG11_chr13_52007398_52038600	0/0	c0003	1479	8	0	8	0	0	0	copy fasta	ALG11	chr13	52007398	52038600
ALG11_chr13_52007398_52038600	0/0	c0004	1479	4	0	0	4	0	0	copy fasta	ALG11	chr13	52007398	52038600
ALG11_chr13_52007398_52038600	0/0	c0005	1479	1	0	0	1	0	0	copy fasta	ALG11	chr13	52007398	52038600
ALG11_chr13_52007398_52038600	0/0	c0006	1479	1	0	0	0	1	0	copy fasta	ALG11	chr13	52007398	52038600
ALG11_chr13_52007398_52038600	0/0	c0007	1479	1	1	0	0	0	0	copy fasta	ALG11	chr13	52007398	52038600
ALG12_chr22_49895229_49923438	1/1	c0001	1467	196	19	46	103	7	19	copy fasta	ALG12	chr22	49895229	49923438
ALG12_chr22_49895229_49923438	0/0	c0002	1467	78	43	6	15	4	10	copy fasta	ALG12	chr22	49895229	49923438
ALG12_chr22_49895229_49923438	0/0	c0003	1467	30	1	5	16	0	8	copy fasta	ALG12	chr22	49895229	49923438
ALG12_chr22_49895229_49923438	0/0	c0004	1467	11	8	1	0	0	2	copy fasta	ALG12	chr22	49895229	49923438
ALG12_chr22_49895229_49923438	0/0	c0005	1467	8	7	1	0	0	0	copy fasta	ALG12	chr22	49895229	49923438
ALG12_chr22_49895229_49923438	0/0	c0006	1467	8	0	0	7	0	1	copy fasta	ALG12	chr22	49895229	49923438
ALG12_chr22_49895229_49923438	0/0	c0007	1467	4	0	0	0	0	4	copy fasta	ALG12	chr22	49895229	49923438
ALG12_chr22_49895229_49923438	0/0	c0008	1467	2	2	0	0	0	0	copy fasta	ALG12	chr22	49895229	49923438
ALG12_chr22_49895229_49923438	0/0	c0009	1467	2	2	0	0	0	0	copy fasta	ALG12	chr22	49895229	49923438
ALG12_chr22_49895229_49923438	0/0	c0010	1467	1	0	1	0	0	0	copy fasta	ALG12	chr22	49895229	49923438
ALG12_chr22_49895229_49923438	0/0	c0011	1467	1	0	0	0	1	0	copy fasta	ALG12	chr22	49895229	49923438
ALG12_chr22_49895229_49923438	0/0	c0012	1467	1	0	0	1	0	0	copy fasta	ALG12	chr22	49895229	49923438
ALG12_chr22_49895229_49923438	0/0	c0013	1467	1	1	0	0	0	0	copy fasta	ALG12	chr22	49895229	49923438
ALG12_chr22_49895229_49923438	0/0	c0014	1467	1	1	0	0	0	0	copy fasta	ALG12	chr22	49895229	49923438
ALG12_chr22_49895229_49923438	0/0	c0015	1467	1	1	0	0	0	0	copy fasta	ALG12	chr22	49895229	49923438
ALG12_chr22_49895229_49923438	0/0	c0016	1467	1	1	0	0	0	0	copy fasta	ALG12	chr22	49895229	49923438
ALG12_chr22_49895229_49923438	0/0	c0017	1467	1	1	0	0	0	0	copy fasta	ALG12	chr22	49895229	49923438
ALG12_chr22_49895229_49923438	0/0	c0018	1467	1	1	0	0	0	0	copy fasta	ALG12	chr22	49895229	49923438
ALG13_chrX_111676170_111765649	1/0	c0001	3414	134	39	20	57	5	12	copy fasta	ALG13	chrX	111676170	111765649
ALG13_chrX_111676170_111765649	0/0	c0002	3414	21	21	0	0	0	0	copy fasta	ALG13	chrX	111676170	111765649
ALG13_chrX_111676170_111765649	0/0	c0003	3417	11	2	1	7	0	1	copy fasta	ALG13	chrX	111676170	111765649
ALG13_chrX_111676170_111765649	0/0	c0004	3411	4	4	0	0	0	0	copy fasta	ALG13	chrX	111676170	111765649
ALG13_chrX_111676170_111765649	0/0	c0005	3417	3	3	0	0	0	0	copy fasta	ALG13	chrX	111676170	111765649
ALG13_chrX_111676170_111765649	0/1	c0006	3414	2	0	1	0	0	0	copy fasta	ALG13	chrX	111676170	111765649
ALG13_chrX_111676170_111765649	0/0	c0007	3414	2	0	0	1	0	1	copy fasta	ALG13	chrX	111676170	111765649
ALG13_chrX_111676170_111765649	0/0	c0008	3420	2	2	0	0	0	0	copy fasta	ALG13	chrX	111676170	111765649
ALG13_chrX_111676170_111765649	0/0	c0009	3417	1	1	0	0	0	0	copy fasta	ALG13	chrX	111676170	111765649
ALG13_chrX_111676170_111765649	0/0	c0010	3420	1	1	0	0	0	0	copy fasta	ALG13	chrX	111676170	111765649
ALG13_chrX_111676170_111765649	0/0	c0011	3415	1	0	0	1	0	0	copy fasta	ALG13	chrX	111676170	111765649
ALG13_chrX_111676170_111765649	0/0	c0012	3417	1	0	0	0	0	1	copy fasta	ALG13	chrX	111676170	111765649
ALG13_chrX_111676170_111765649	0/0	c0013	3414	1	0	0	1	0	0	copy fasta	ALG13	chrX	111676170	111765649
ALG13_chrX_111676170_111765649	0/0	c0014	3411	1	0	0	1	0	0	copy fasta	ALG13	chrX	111676170	111765649
ALG13_chrX_111676170_111765649	0/0	c0015	3408	1	0	0	0	0	1	copy fasta	ALG13	chrX	111676170	111765649
ALG13_chrX_111676170_111765649	0/0	c0016	3414	1	0	1	0	0	0	copy fasta	ALG13	chrX	111676170	111765649
ALG13_chrX_111676170_111765649	0/0	c0017	3414	1	1	0	0	0	0	copy fasta	ALG13	chrX	111676170	111765649
ALG13_chrX_111676170_111765649	0/0	c0018	3414	1	0	0	1	0	0	copy fasta	ALG13	chrX	111676170	111765649
ALG13_chrX_111676170_111765649	0/0	c0019	3414	1	0	0	1	0	0	copy fasta	ALG13	chrX	111676170	111765649