JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ALG13_chrX_111676170_111765649	0/0	c0020	3413	1	0	0	1	0	0	copy fasta	ALG13	chrX	111676170	111765649
ALG14_chr1_94969405_95077951	1/1	c0001	651	381	90	74	168	14	33	copy fasta	ALG14	chr1	94969405	95077951
ALG14_chr1_94969405_95077951	0/0	c0002	651	4	0	0	4	0	0	copy fasta	ALG14	chr1	94969405	95077951
ALG14_chr1_94969405_95077951	0/0	c0003	651	1	0	0	0	0	1	copy fasta	ALG14	chr1	94969405	95077951
ALG14_chr1_94969405_95077951	0/0	c0004	651	1	0	0	1	0	0	copy fasta	ALG14	chr1	94969405	95077951
ALG14_chr1_94969405_95077951	0/0	c0005	651	1	0	0	1	0	0	copy fasta	ALG14	chr1	94969405	95077951
ALG1L2_chr3_130076831_130103390	1/0	c0001	648	183	20	13	137	1	11	copy fasta	ALG1L2	chr3	130076831	130103390
ALG1L2_chr3_130076831_130103390	0/0	c0002	647	30	11	9	0	4	6	copy fasta	ALG1L2	chr3	130076831	130103390
ALG1L2_chr3_130076831_130103390	0/0	c0003	648	14	12	2	0	0	0	copy fasta	ALG1L2	chr3	130076831	130103390
ALG1L2_chr3_130076831_130103390	0/0	c0004	647	7	2	2	1	2	0	copy fasta	ALG1L2	chr3	130076831	130103390
ALG1L2_chr3_130076831_130103390	0/0	c0005	647	5	5	0	0	0	0	copy fasta	ALG1L2	chr3	130076831	130103390
ALG1L2_chr3_130076831_130103390	0/0	c0006	648	4	4	0	0	0	0	copy fasta	ALG1L2	chr3	130076831	130103390
ALG1L2_chr3_130076831_130103390	0/0	c0007	647	2	2	0	0	0	0	copy fasta	ALG1L2	chr3	130076831	130103390
ALG1L2_chr3_130076831_130103390	0/0	c0008	648	2	0	0	0	1	1	copy fasta	ALG1L2	chr3	130076831	130103390
ALG1L2_chr3_130076831_130103390	0/0	c0009	647	2	2	0	0	0	0	copy fasta	ALG1L2	chr3	130076831	130103390
ALG1L2_chr3_130076831_130103390	0/0	c0010	648	2	0	0	2	0	0	copy fasta	ALG1L2	chr3	130076831	130103390
ALG1L2_chr3_130076831_130103390	0/0	c0011	647	2	1	1	0	0	0	copy fasta	ALG1L2	chr3	130076831	130103390
ALG1L2_chr3_130076831_130103390	0/0	c0012	647	1	1	0	0	0	0	copy fasta	ALG1L2	chr3	130076831	130103390
ALG1L2_chr3_130076831_130103390	0/0	c0013	648	1	0	0	1	0	0	copy fasta	ALG1L2	chr3	130076831	130103390
ALG1L2_chr3_130076831_130103390	0/0	c0014	648	1	0	1	0	0	0	copy fasta	ALG1L2	chr3	130076831	130103390
ALG1L2_chr3_130076831_130103390	0/0	c0015	647	1	1	0	0	0	0	copy fasta	ALG1L2	chr3	130076831	130103390
ALG1L2_chr3_130076831_130103390	0/0	c0016	648	1	0	0	1	0	0	copy fasta	ALG1L2	chr3	130076831	130103390
ALG1L2_chr3_130076831_130103390	0/0	c0017	647	1	1	0	0	0	0	copy fasta	ALG1L2	chr3	130076831	130103390
ALG1L2_chr3_130076831_130103390	0/0	c0018	648	1	1	0	0	0	0	copy fasta	ALG1L2	chr3	130076831	130103390
ALG1L2_chr3_130076831_130103390	0/0	c0019	648	1	1	0	0	0	0	copy fasta	ALG1L2	chr3	130076831	130103390
ALG1_chr16_5066843_5092379	0/0	c0001	1395	205	37	29	108	5	26	copy fasta	ALG1	chr16	5066843	5092379
ALG1_chr16_5066843_5092379	1/1	c0002	1395	93	36	16	25	6	8	copy fasta	ALG1	chr16	5066843	5092379
ALG1_chr16_5066843_5092379	0/0	c0003	1395	59	14	20	25	0	0	copy fasta	ALG1	chr16	5066843	5092379
ALG1_chr16_5066843_5092379	0/0	c0004	1395	51	1	13	35	0	2	copy fasta	ALG1	chr16	5066843	5092379
ALG1_chr16_5066843_5092379	0/0	c0005	1395	11	5	2	0	1	3	copy fasta	ALG1	chr16	5066843	5092379
ALG1_chr16_5066843_5092379	0/0	c0006	1395	8	3	3	0	0	2	copy fasta	ALG1	chr16	5066843	5092379
ALG1_chr16_5066843_5092379	0/0	c0007	1395	3	0	0	3	0	0	copy fasta	ALG1	chr16	5066843	5092379
ALG1_chr16_5066843_5092379	0/0	c0008	1395	1	0	0	0	0	1	copy fasta	ALG1	chr16	5066843	5092379
ALG1_chr16_5066843_5092379	0/0	c0009	1395	1	0	1	0	0	0	copy fasta	ALG1	chr16	5066843	5092379
ALG1_chr16_5066843_5092379	0/0	c0010	1395	1	0	0	1	0	0	copy fasta	ALG1	chr16	5066843	5092379
ALG1_chr16_5066843_5092379	0/0	c0011	1395	1	0	1	0	0	0	copy fasta	ALG1	chr16	5066843	5092379
ALG1_chr16_5066843_5092379	0/0	c0012	1395	1	1	0	0	0	0	copy fasta	ALG1	chr16	5066843	5092379
ALG1_chr16_5066843_5092379	0/0	c0013	1395	1	1	0	0	0	0	copy fasta	ALG1	chr16	5066843	5092379
ALG1_chr16_5066843_5092379	0/0	c0014	1395	1	0	0	1	0	0	copy fasta	ALG1	chr16	5066843	5092379
ALG1_chr16_5066843_5092379	0/0	c0015	1395	1	0	1	0	0	0	copy fasta	ALG1	chr16	5066843	5092379
ALG1_chr16_5066843_5092379	0/0	c0016	1382	1	0	0	1	0	0	copy fasta	ALG1	chr16	5066843	5092379
ALG1_chr16_5066843_5092379	0/0	c0017	1395	1	0	0	1	0	0	copy fasta	ALG1	chr16	5066843	5092379
ALG1_chr16_5066843_5092379	0/0	c0018	1395	1	1	0	0	0	0	copy fasta	ALG1	chr16	5066843	5092379
ALG1_chr16_5066843_5092379	0/0	c0019	1395	1	0	0	0	0	1	copy fasta	ALG1	chr16	5066843	5092379
ALG1_chr16_5066843_5092379	0/0	c0020	1395	1	0	0	0	0	1	copy fasta	ALG1	chr16	5066843	5092379
ALG1_chr16_5066843_5092379	0/0	c0021	1395	1	1	0	0	0	0	copy fasta	ALG1	chr16	5066843	5092379
ALG2_chr9_99211425_99226942	1/1	c0001	1251	340	82	66	134	17	39	copy fasta	ALG2	chr9	99211425	99226942
ALG2_chr9_99211425_99226942	0/0	c0002	1251	15	0	2	13	0	0	copy fasta	ALG2	chr9	99211425	99226942
ALG2_chr9_99211425_99226942	0/0	c0003	1251	9	0	5	2	1	1	copy fasta	ALG2	chr9	99211425	99226942
ALG2_chr9_99211425_99226942	0/0	c0004	1251	5	3	0	0	0	2	copy fasta	ALG2	chr9	99211425	99226942