JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ANKMY2_chr7_16594779_16650754	0/0	c0004	1326	39	6	9	17	6	1	copy fasta	ANKMY2	chr7	16594779	16650754
ANKMY2_chr7_16594779_16650754	0/0	c0005	1326	23	1	1	21	0	0	copy fasta	ANKMY2	chr7	16594779	16650754
ANKMY2_chr7_16594779_16650754	0/0	c0006	1326	10	0	1	9	0	0	copy fasta	ANKMY2	chr7	16594779	16650754
ANKMY2_chr7_16594779_16650754	0/0	c0007	1326	8	2	1	4	1	0	copy fasta	ANKMY2	chr7	16594779	16650754
ANKMY2_chr7_16594779_16650754	0/0	c0008	1326	7	0	4	3	0	0	copy fasta	ANKMY2	chr7	16594779	16650754
ANKMY2_chr7_16594779_16650754	0/0	c0009	1326	2	0	0	2	0	0	copy fasta	ANKMY2	chr7	16594779	16650754
ANKMY2_chr7_16594779_16650754	0/0	c0010	1326	2	1	0	1	0	0	copy fasta	ANKMY2	chr7	16594779	16650754
ANKMY2_chr7_16594779_16650754	0/0	c0011	1326	2	2	0	0	0	0	copy fasta	ANKMY2	chr7	16594779	16650754
ANKMY2_chr7_16594779_16650754	0/0	c0012	1326	1	0	0	1	0	0	copy fasta	ANKMY2	chr7	16594779	16650754
ANKMY2_chr7_16594779_16650754	0/0	c0013	1326	1	1	0	0	0	0	copy fasta	ANKMY2	chr7	16594779	16650754
ANKMY2_chr7_16594779_16650754	0/0	c0014	1326	1	1	0	0	0	0	copy fasta	ANKMY2	chr7	16594779	16650754
ANKMY2_chr7_16594779_16650754	0/0	c0015	1326	1	1	0	0	0	0	copy fasta	ANKMY2	chr7	16594779	16650754
ANKMY2_chr7_16594779_16650754	0/0	c0016	1326	1	0	1	0	0	0	copy fasta	ANKMY2	chr7	16594779	16650754
ANKMY2_chr7_16594779_16650754	0/0	c0017	1326	1	1	0	0	0	0	copy fasta	ANKMY2	chr7	16594779	16650754
ANKMY2_chr7_16594779_16650754	0/0	c0018	1326	1	1	0	0	0	0	copy fasta	ANKMY2	chr7	16594779	16650754
ANKMY2_chr7_16594779_16650754	0/0	c0019	1326	1	1	0	0	0	0	copy fasta	ANKMY2	chr7	16594779	16650754
ANKMY2_chr7_16594779_16650754	0/0	c0020	1326	1	0	0	1	0	0	copy fasta	ANKMY2	chr7	16594779	16650754
ANKMY2_chr7_16594779_16650754	0/0	c0021	1326	1	0	0	1	0	0	copy fasta	ANKMY2	chr7	16594779	16650754
ANKMY2_chr7_16594779_16650754	0/0	c0022	1326	1	0	0	0	0	1	copy fasta	ANKMY2	chr7	16594779	16650754
ANKRA2_chr5_73547190_73570639	1/1	c0001	942	392	92	80	160	16	42	copy fasta	ANKRA2	chr5	73547190	73570639
ANKRD10_chr13_110873540_110920069	1/1	c0001	1263	294	72	72	94	16	38	copy fasta	ANKRD10	chr13	110873540	110920069
ANKRD10_chr13_110873540_110920069	0/0	c0002	1263	39	3	0	29	0	7	copy fasta	ANKRD10	chr13	110873540	110920069
ANKRD10_chr13_110873540_110920069	0/0	c0003	1263	24	14	6	3	0	1	copy fasta	ANKRD10	chr13	110873540	110920069
ANKRD10_chr13_110873540_110920069	0/0	c0004	1263	2	0	0	1	0	1	copy fasta	ANKRD10	chr13	110873540	110920069
ANKRD10_chr13_110873540_110920069	0/0	c0005	1263	1	0	0	0	0	1	copy fasta	ANKRD10	chr13	110873540	110920069
ANKRD10_chr13_110873540_110920069	0/0	c0006	1263	1	0	0	1	0	0	copy fasta	ANKRD10	chr13	110873540	110920069
ANKRD10_chr13_110873540_110920069	0/0	c0007	1263	1	1	0	0	0	0	copy fasta	ANKRD10	chr13	110873540	110920069
ANKRD11_chr16_89262630_89495561	0/0	c0001	7992	97	29	24	21	9	14	copy fasta	ANKRD11	chr16	89262630	89495561
ANKRD11_chr16_89262630_89495561	0/1	c0002	7992	58	12	9	29	2	5	copy fasta	ANKRD11	chr16	89262630	89495561
ANKRD11_chr16_89262630_89495561	1/0	c0003	7992	31	2	11	9	2	6	copy fasta	ANKRD11	chr16	89262630	89495561
ANKRD11_chr16_89262630_89495561	0/0	c0004	7992	31	0	6	20	0	5	copy fasta	ANKRD11	chr16	89262630	89495561
ANKRD11_chr16_89262630_89495561	0/0	c0005	7992	10	0	0	9	1	0	copy fasta	ANKRD11	chr16	89262630	89495561
ANKRD11_chr16_89262630_89495561	0/0	c0006	7992	6	6	0	0	0	0	copy fasta	ANKRD11	chr16	89262630	89495561
ANKRD11_chr16_89262630_89495561	0/0	c0007	7992	5	5	0	0	0	0	copy fasta	ANKRD11	chr16	89262630	89495561
ANKRD11_chr16_89262630_89495561	0/0	c0008	7992	3	3	0	0	0	0	copy fasta	ANKRD11	chr16	89262630	89495561
ANKRD11_chr16_89262630_89495561	0/0	c0009	7992	3	0	0	3	0	0	copy fasta	ANKRD11	chr16	89262630	89495561
ANKRD11_chr16_89262630_89495561	0/0	c0010	7992	3	0	0	1	0	2	copy fasta	ANKRD11	chr16	89262630	89495561
ANKRD11_chr16_89262630_89495561	0/0	c0011	7992	3	0	0	3	0	0	copy fasta	ANKRD11	chr16	89262630	89495561
ANKRD11_chr16_89262630_89495561	0/0	c0012	7992	3	0	3	0	0	0	copy fasta	ANKRD11	chr16	89262630	89495561
ANKRD11_chr16_89262630_89495561	0/0	c0013	7992	2	2	0	0	0	0	copy fasta	ANKRD11	chr16	89262630	89495561
ANKRD11_chr16_89262630_89495561	0/0	c0014	7992	2	2	0	0	0	0	copy fasta	ANKRD11	chr16	89262630	89495561
ANKRD11_chr16_89262630_89495561	0/0	c0015	7992	2	0	2	0	0	0	copy fasta	ANKRD11	chr16	89262630	89495561
ANKRD11_chr16_89262630_89495561	0/0	c0016	7992	2	0	0	2	0	0	copy fasta	ANKRD11	chr16	89262630	89495561
ANKRD11_chr16_89262630_89495561	0/0	c0017	7992	2	1	1	0	0	0	copy fasta	ANKRD11	chr16	89262630	89495561
ANKRD11_chr16_89262630_89495561	0/0	c0018	7992	2	2	0	0	0	0	copy fasta	ANKRD11	chr16	89262630	89495561
ANKRD11_chr16_89262630_89495561	0/0	c0019	7992	2	2	0	0	0	0	copy fasta	ANKRD11	chr16	89262630	89495561
ANKRD11_chr16_89262630_89495561	0/0	c0020	7992	2	0	0	0	0	2	copy fasta	ANKRD11	chr16	89262630	89495561
ANKRD11_chr16_89262630_89495561	0/0	c0021	7992	2	2	0	0	0	0	copy fasta	ANKRD11	chr16	89262630	89495561
ANKRD11_chr16_89262630_89495561	0/0	c0022	7992	2	2	0	0	0	0	copy fasta	ANKRD11	chr16	89262630	89495561
ANKRD11_chr16_89262630_89495561	0/0	c0023	7992	1	1	0	0	0	0	copy fasta	ANKRD11	chr16	89262630	89495561