Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
A2M_chr12_9062708_9120919	0/0	c0006	4425	4	0	1	0	1	2	copy fasta	A2M	chr12	9062708	9120919
A2M_chr12_9062708_9120919	1/0	c0007	4425	3	2	0	0	0	0	copy fasta	A2M	chr12	9062708	9120919
A2M_chr12_9062708_9120919	0/0	c0008	4425	2	0	0	2	0	0	copy fasta	A2M	chr12	9062708	9120919
A2M_chr12_9062708_9120919	0/0	c0009	4425	2	2	0	0	0	0	copy fasta	A2M	chr12	9062708	9120919
A2M_chr12_9062708_9120919	0/0	c0010	4425	2	1	1	0	0	0	copy fasta	A2M	chr12	9062708	9120919
A2M_chr12_9062708_9120919	0/0	c0011	4425	2	0	0	2	0	0	copy fasta	A2M	chr12	9062708	9120919
A2M_chr12_9062708_9120919	0/0	c0012	4425	1	1	0	0	0	0	copy fasta	A2M	chr12	9062708	9120919
A2M_chr12_9062708_9120919	0/0	c0013	4425	1	1	0	0	0	0	copy fasta	A2M	chr12	9062708	9120919
A2M_chr12_9062708_9120919	0/0	c0014	4425	1	0	0	1	0	0	copy fasta	A2M	chr12	9062708	9120919
A2M_chr12_9062708_9120919	0/0	c0015	4425	1	1	0	0	0	0	copy fasta	A2M	chr12	9062708	9120919
A2M_chr12_9062708_9120919	0/0	c0016	4425	1	1	0	0	0	0	copy fasta	A2M	chr12	9062708	9120919
A2M_chr12_9062708_9120919	0/0	c0017	4425	1	0	0	0	0	1	copy fasta	A2M	chr12	9062708	9120919
A2M_chr12_9062708_9120919	0/0	c0018	4425	1	0	0	0	0	1	copy fasta	A2M	chr12	9062708	9120919
A2M_chr12_9062708_9120919	0/0	c0019	4425	1	1	0	0	0	0	copy fasta	A2M	chr12	9062708	9120919
A2M_chr12_9062708_9120919	0/0	c0020	4425	1	1	0	0	0	0	copy fasta	A2M	chr12	9062708	9120919
A2M_chr12_9062708_9120919	0/0	c0021	4425	1	0	1	0	0	0	copy fasta	A2M	chr12	9062708	9120919
A2M_chr12_9062708_9120919	0/0	c0022	4425	1	1	0	0	0	0	copy fasta	A2M	chr12	9062708	9120919
A2M_chr12_9062708_9120919	0/0	c0023	4425	1	0	1	0	0	0	copy fasta	A2M	chr12	9062708	9120919
A2M_chr12_9062708_9120919	0/0	c0024	4425	1	0	1	0	0	0	copy fasta	A2M	chr12	9062708	9120919
A2M_chr12_9062708_9120919	0/0	c0025	4425	1	1	0	0	0	0	copy fasta	A2M	chr12	9062708	9120919
A2M_chr12_9062708_9120919	0/0	c0026	4425	1	0	1	0	0	0	copy fasta	A2M	chr12	9062708	9120919
A2M_chr12_9062708_9120919	0/0	c0027	4425	1	0	0	1	0	0	copy fasta	A2M	chr12	9062708	9120919
A3GALT2_chr1_33301766_33326098	1/1	c0001	1023	394	80	62	187	15	48	copy fasta	A3GALT2	chr1	33301766	33326098
A3GALT2_chr1_33301766_33326098	0/0	c0002	1023	4	4	0	0	0	0	copy fasta	A3GALT2	chr1	33301766	33326098
A3GALT2_chr1_33301766_33326098	0/0	c0003	1023	3	2	1	0	0	0	copy fasta	A3GALT2	chr1	33301766	33326098
A3GALT2_chr1_33301766_33326098	0/0	c0004	1023	2	2	0	0	0	0	copy fasta	A3GALT2	chr1	33301766	33326098
A3GALT2_chr1_33301766_33326098	0/0	c0005	1023	2	2	0	0	0	0	copy fasta	A3GALT2	chr1	33301766	33326098
A3GALT2_chr1_33301766_33326098	0/0	c0006	1023	2	2	0	0	0	0	copy fasta	A3GALT2	chr1	33301766	33326098
A3GALT2_chr1_33301766_33326098	0/0	c0007	1023	2	2	0	0	0	0	copy fasta	A3GALT2	chr1	33301766	33326098
A3GALT2_chr1_33301766_33326098	0/0	c0008	1000	2	0	1	1	0	0	copy fasta	A3GALT2	chr1	33301766	33326098
A3GALT2_chr1_33301766_33326098	0/0	c0009	1023	1	0	0	1	0	0	copy fasta	A3GALT2	chr1	33301766	33326098
A3GALT2_chr1_33301766_33326098	0/0	c0010	1023	1	1	0	0	0	0	copy fasta	A3GALT2	chr1	33301766	33326098
A3GALT2_chr1_33301766_33326098	0/0	c0011	1023	1	1	0	0	0	0	copy fasta	A3GALT2	chr1	33301766	33326098
A3GALT2_chr1_33301766_33326098	0/0	c0012	1023	1	0	0	0	1	0	copy fasta	A3GALT2	chr1	33301766	33326098
A3GALT2_chr1_33301766_33326098	0/0	c0013	1023	1	0	0	1	0	0	copy fasta	A3GALT2	chr1	33301766	33326098
A3GALT2_chr1_33301766_33326098	0/0	c0014	1023	1	1	0	0	0	0	copy fasta	A3GALT2	chr1	33301766	33326098
A3GALT2_chr1_33301766_33326098	0/0	c0015	1023	1	1	0	0	0	0	copy fasta	A3GALT2	chr1	33301766	33326098
A4GALT_chr22_42687121_42725870	0/0	c0001	1062	149	20	19	99	1	10	copy fasta	A4GALT	chr22	42687121	42725870
A4GALT_chr22_42687121_42725870	1/0	c0002	1062	113	11	32	51	6	12	copy fasta	A4GALT	chr22	42687121	42725870
A4GALT_chr22_42687121_42725870	0/1	c0003	1062	110	40	20	24	11	14	copy fasta	A4GALT	chr22	42687121	42725870
A4GALT_chr22_42687121_42725870	0/0	c0004	1062	6	0	0	6	0	0	copy fasta	A4GALT	chr22	42687121	42725870
A4GALT_chr22_42687121_42725870	0/0	c0005	1062	6	6	0	0	0	0	copy fasta	A4GALT	chr22	42687121	42725870
A4GALT_chr22_42687121_42725870	0/0	c0006	1062	5	4	1	0	0	0	copy fasta	A4GALT	chr22	42687121	42725870
A4GALT_chr22_42687121_42725870	0/0	c0007	1062	4	3	1	0	0	0	copy fasta	A4GALT	chr22	42687121	42725870
A4GALT_chr22_42687121_42725870	0/0	c0008	1062	4	4	0	0	0	0	copy fasta	A4GALT	chr22	42687121	42725870
A4GALT_chr22_42687121_42725870	0/0	c0009	1062	3	2	1	0	0	0	copy fasta	A4GALT	chr22	42687121	42725870
A4GALT_chr22_42687121_42725870	0/0	c0010	1062	3	0	3	0	0	0	copy fasta	A4GALT	chr22	42687121	42725870
A4GALT_chr22_42687121_42725870	0/0	c0011	1062	1	0	0	0	0	1	copy fasta	A4GALT	chr22	42687121	42725870
A4GALT_chr22_42687121_42725870	0/0	c0012	1062	1	0	1	0	0	0	copy fasta	A4GALT	chr22	42687121	42725870
A4GALT_chr22_42687121_42725870	0/0	c0013	1062	1	0	0	0	0	1	copy fasta	A4GALT	chr22	42687121	42725870