JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
AP1B1_chr22_29322680_29393570	0/0	c0005	2850	4	1	0	0	1	2	copy fasta	AP1B1	chr22	29322680	29393570
AP1B1_chr22_29322680_29393570	0/0	c0006	2850	2	0	0	0	0	2	copy fasta	AP1B1	chr22	29322680	29393570
AP1B1_chr22_29322680_29393570	0/0	c0007	2850	2	0	0	0	0	2	copy fasta	AP1B1	chr22	29322680	29393570
AP1B1_chr22_29322680_29393570	0/0	c0008	2850	1	0	0	1	0	0	copy fasta	AP1B1	chr22	29322680	29393570
AP1B1_chr22_29322680_29393570	0/0	c0009	2850	1	0	0	0	0	1	copy fasta	AP1B1	chr22	29322680	29393570
AP1B1_chr22_29322680_29393570	0/0	c0010	2850	1	1	0	0	0	0	copy fasta	AP1B1	chr22	29322680	29393570
AP1B1_chr22_29322680_29393570	0/0	c0011	2850	1	0	0	1	0	0	copy fasta	AP1B1	chr22	29322680	29393570
AP1B1_chr22_29322680_29393570	0/0	c0012	2850	1	1	0	0	0	0	copy fasta	AP1B1	chr22	29322680	29393570
AP1B1_chr22_29322680_29393570	0/0	c0013	2850	1	0	0	1	0	0	copy fasta	AP1B1	chr22	29322680	29393570
AP1B1_chr22_29322680_29393570	0/0	c0014	2850	1	1	0	0	0	0	copy fasta	AP1B1	chr22	29322680	29393570
AP1B1_chr22_29322680_29393570	0/0	c0015	2850	1	0	0	1	0	0	copy fasta	AP1B1	chr22	29322680	29393570
AP1B1_chr22_29322680_29393570	0/0	c0016	2850	1	1	0	0	0	0	copy fasta	AP1B1	chr22	29322680	29393570
AP1B1_chr22_29322680_29393570	0/0	c0017	2850	1	0	0	1	0	0	copy fasta	AP1B1	chr22	29322680	29393570
AP1G1_chr16_71724000_71813834	1/1	c0001	2469	217	66	40	80	12	17	copy fasta	AP1G1	chr16	71724000	71813834
AP1G1_chr16_71724000_71813834	0/0	c0002	2469	82	5	19	36	3	19	copy fasta	AP1G1	chr16	71724000	71813834
AP1G1_chr16_71724000_71813834	0/0	c0003	2469	11	11	0	0	0	0	copy fasta	AP1G1	chr16	71724000	71813834
AP1G1_chr16_71724000_71813834	0/0	c0004	2469	4	0	3	0	1	0	copy fasta	AP1G1	chr16	71724000	71813834
AP1G1_chr16_71724000_71813834	0/0	c0005	2469	2	0	0	0	0	2	copy fasta	AP1G1	chr16	71724000	71813834
AP1G1_chr16_71724000_71813834	0/0	c0006	2469	1	0	0	1	0	0	copy fasta	AP1G1	chr16	71724000	71813834
AP1G1_chr16_71724000_71813834	0/0	c0007	2469	1	0	0	1	0	0	copy fasta	AP1G1	chr16	71724000	71813834
AP1G1_chr16_71724000_71813834	0/0	c0008	2469	1	1	0	0	0	0	copy fasta	AP1G1	chr16	71724000	71813834
AP1G1_chr16_71724000_71813834	0/0	c0009	2469	1	1	0	0	0	0	copy fasta	AP1G1	chr16	71724000	71813834
AP1G2_chr14_23554567_23572791	1/1	c0001	2358	339	72	65	148	13	39	copy fasta	AP1G2	chr14	23554567	23572791
AP1G2_chr14_23554567_23572791	0/0	c0002	2358	15	14	1	0	0	0	copy fasta	AP1G2	chr14	23554567	23572791
AP1G2_chr14_23554567_23572791	0/0	c0003	2358	11	0	0	11	0	0	copy fasta	AP1G2	chr14	23554567	23572791
AP1G2_chr14_23554567_23572791	0/0	c0004	2358	10	1	5	0	1	3	copy fasta	AP1G2	chr14	23554567	23572791
AP1G2_chr14_23554567_23572791	0/0	c0005	2358	6	6	0	0	0	0	copy fasta	AP1G2	chr14	23554567	23572791
AP1G2_chr14_23554567_23572791	0/0	c0006	2358	4	3	1	0	0	0	copy fasta	AP1G2	chr14	23554567	23572791
AP1G2_chr14_23554567_23572791	0/0	c0007	2358	3	1	0	0	2	0	copy fasta	AP1G2	chr14	23554567	23572791
AP1G2_chr14_23554567_23572791	0/0	c0008	2358	2	2	0	0	0	0	copy fasta	AP1G2	chr14	23554567	23572791
AP1G2_chr14_23554567_23572791	0/0	c0009	2341	1	0	0	1	0	0	copy fasta	AP1G2	chr14	23554567	23572791
AP1G2_chr14_23554567_23572791	0/0	c0010	2358	1	0	0	1	0	0	copy fasta	AP1G2	chr14	23554567	23572791
AP1G2_chr14_23554567_23572791	0/0	c0011	2358	1	0	0	1	0	0	copy fasta	AP1G2	chr14	23554567	23572791
AP1G2_chr14_23554567_23572791	0/0	c0012	2358	1	0	0	1	0	0	copy fasta	AP1G2	chr14	23554567	23572791
AP1G2_chr14_23554567_23572791	0/0	c0013	2358	1	1	0	0	0	0	copy fasta	AP1G2	chr14	23554567	23572791
AP1G2_chr14_23554567_23572791	0/0	c0014	2358	1	0	0	1	0	0	copy fasta	AP1G2	chr14	23554567	23572791
AP1M1_chr19_16192911_16250906	1/1	c0001	1272	207	75	32	73	2	23	copy fasta	AP1M1	chr19	16192911	16250906
AP1M1_chr19_16192911_16250906	0/0	c0002	1272	98	10	29	38	6	15	copy fasta	AP1M1	chr19	16192911	16250906
AP1M1_chr19_16192911_16250906	0/0	c0003	1272	1	1	0	0	0	0	copy fasta	AP1M1	chr19	16192911	16250906
AP1M1_chr19_16192911_16250906	0/0	c0004	1272	1	0	0	1	0	0	copy fasta	AP1M1	chr19	16192911	16250906
AP1M1_chr19_16192911_16250906	0/0	c0005	1272	1	0	1	0	0	0	copy fasta	AP1M1	chr19	16192911	16250906
AP1M2_chr19_10567671_10592312	1/1	c0001	1272	192	59	40	43	13	35	copy fasta	AP1M2	chr19	10567671	10592312
AP1M2_chr19_10567671_10592312	0/0	c0002	1272	177	28	27	112	1	9	copy fasta	AP1M2	chr19	10567671	10592312
AP1M2_chr19_10567671_10592312	0/0	c0003	1272	18	0	0	18	0	0	copy fasta	AP1M2	chr19	10567671	10592312
AP1M2_chr19_10567671_10592312	0/0	c0004	1272	4	0	2	0	2	0	copy fasta	AP1M2	chr19	10567671	10592312
AP1M2_chr19_10567671_10592312	0/0	c0005	1272	1	1	0	0	0	0	copy fasta	AP1M2	chr19	10567671	10592312
AP1M2_chr19_10567671_10592312	0/0	c0006	1272	1	0	0	1	0	0	copy fasta	AP1M2	chr19	10567671	10592312
AP1M2_chr19_10567671_10592312	0/0	c0007	1261	1	0	1	0	0	0	copy fasta	AP1M2	chr19	10567671	10592312
AP1S1_chr7_101149476_101166276	1/1	c0001	477	399	90	73	169	16	49	copy fasta	AP1S1	chr7	101149476	101166276
AP1S1_chr7_101149476_101166276	0/0	c0002	477	19	0	0	18	0	1	copy fasta	AP1S1	chr7	101149476	101166276