JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
APLF_chr2_68462585_68585162	0/0	c0009	1536	1	0	0	1	0	0	copy fasta	APLF	chr2	68462585	68585162
APLF_chr2_68462585_68585162	0/0	c0010	1536	1	1	0	0	0	0	copy fasta	APLF	chr2	68462585	68585162
APLF_chr2_68462585_68585162	0/0	c0011	1536	1	1	0	0	0	0	copy fasta	APLF	chr2	68462585	68585162
APLF_chr2_68462585_68585162	0/0	c0012	1536	1	1	0	0	0	0	copy fasta	APLF	chr2	68462585	68585162
APLF_chr2_68462585_68585162	0/0	c0013	1536	1	1	0	0	0	0	copy fasta	APLF	chr2	68462585	68585162
APLF_chr2_68462585_68585162	0/0	c0014	1536	1	1	0	0	0	0	copy fasta	APLF	chr2	68462585	68585162
APLF_chr2_68462585_68585162	0/0	c0015	1536	1	1	0	0	0	0	copy fasta	APLF	chr2	68462585	68585162
APLNR_chr11_57228591_57242250	0/0	c0001	1143	251	39	43	126	7	36	copy fasta	APLNR	chr11	57228591	57242250
APLNR_chr11_57228591_57242250	1/1	c0002	1143	172	53	35	63	9	10	copy fasta	APLNR	chr11	57228591	57242250
APLNR_chr11_57228591_57242250	0/0	c0003	1143	5	5	0	0	0	0	copy fasta	APLNR	chr11	57228591	57242250
APLNR_chr11_57228591_57242250	0/0	c0004	1143	1	1	0	0	0	0	copy fasta	APLNR	chr11	57228591	57242250
APLNR_chr11_57228591_57242250	0/0	c0005	1143	1	0	0	1	0	0	copy fasta	APLNR	chr11	57228591	57242250
APLN_chrX_129640259_129659956	1/1	c0001	234	315	79	47	146	11	30	copy fasta	APLN	chrX	129640259	129659956
APLN_chrX_129640259_129659956	0/0	c0002	233	1	0	0	1	0	0	copy fasta	APLN	chrX	129640259	129659956
APLN_chrX_129640259_129659956	0/0	c0003	234	1	1	0	0	0	0	copy fasta	APLN	chrX	129640259	129659956
APLP1_chr19_35863574_35884792	1/1	c0001	1956	198	57	32	71	6	30	copy fasta	APLP1	chr19	35863574	35884792
APLP1_chr19_35863574_35884792	0/0	c0002	1956	16	11	2	0	2	1	copy fasta	APLP1	chr19	35863574	35884792
APLP1_chr19_35863574_35884792	0/0	c0003	1956	15	15	0	0	0	0	copy fasta	APLP1	chr19	35863574	35884792
APLP1_chr19_35863574_35884792	0/0	c0004	1956	14	0	0	14	0	0	copy fasta	APLP1	chr19	35863574	35884792
APLP1_chr19_35863574_35884792	0/0	c0005	1956	4	4	0	0	0	0	copy fasta	APLP1	chr19	35863574	35884792
APLP1_chr19_35863574_35884792	0/0	c0006	1956	1	1	0	0	0	0	copy fasta	APLP1	chr19	35863574	35884792
APLP1_chr19_35863574_35884792	0/0	c0007	1956	1	1	0	0	0	0	copy fasta	APLP1	chr19	35863574	35884792
APLP1_chr19_35863574_35884792	0/0	c0008	1956	1	0	0	0	0	1	copy fasta	APLP1	chr19	35863574	35884792
APLP1_chr19_35863574_35884792	0/0	c0009	1956	1	0	1	0	0	0	copy fasta	APLP1	chr19	35863574	35884792
APLP1_chr19_35863574_35884792	0/0	c0010	1956	1	0	0	0	0	1	copy fasta	APLP1	chr19	35863574	35884792
APLP1_chr19_35863574_35884792	0/0	c0011	1956	1	0	1	0	0	0	copy fasta	APLP1	chr19	35863574	35884792
APLP1_chr19_35863574_35884792	0/0	c0012	1956	1	0	0	1	0	0	copy fasta	APLP1	chr19	35863574	35884792
APLP1_chr19_35863574_35884792	0/0	c0013	1956	1	0	0	0	0	1	copy fasta	APLP1	chr19	35863574	35884792
APLP1_chr19_35863574_35884792	0/0	c0014	1956	1	1	0	0	0	0	copy fasta	APLP1	chr19	35863574	35884792
APLP2_chr11_130064894_130149805	1/1	c0001	2256	216	52	39	106	8	9	copy fasta	APLP2	chr11	130064894	130149805
APLP2_chr11_130064894_130149805	0/0	c0002	2256	23	18	1	4	0	0	copy fasta	APLP2	chr11	130064894	130149805
APLP2_chr11_130064894_130149805	0/0	c0003	2250	12	10	2	0	0	0	copy fasta	APLP2	chr11	130064894	130149805
APLP2_chr11_130064894_130149805	0/0	c0004	2250	10	2	0	8	0	0	copy fasta	APLP2	chr11	130064894	130149805
APLP2_chr11_130064894_130149805	0/0	c0005	2256	2	0	0	2	0	0	copy fasta	APLP2	chr11	130064894	130149805
APLP2_chr11_130064894_130149805	0/0	c0006	2250	2	2	0	0	0	0	copy fasta	APLP2	chr11	130064894	130149805
APLP2_chr11_130064894_130149805	0/0	c0007	2256	2	2	0	0	0	0	copy fasta	APLP2	chr11	130064894	130149805
APLP2_chr11_130064894_130149805	0/0	c0008	2256	2	0	0	2	0	0	copy fasta	APLP2	chr11	130064894	130149805
APLP2_chr11_130064894_130149805	0/0	c0009	2256	1	0	0	1	0	0	copy fasta	APLP2	chr11	130064894	130149805
APLP2_chr11_130064894_130149805	0/0	c0010	2256	1	0	0	1	0	0	copy fasta	APLP2	chr11	130064894	130149805
APLP2_chr11_130064894_130149805	0/0	c0011	2256	1	0	0	1	0	0	copy fasta	APLP2	chr11	130064894	130149805
APLP2_chr11_130064894_130149805	0/0	c0012	2256	1	0	0	0	0	1	copy fasta	APLP2	chr11	130064894	130149805
APLP2_chr11_130064894_130149805	0/0	c0013	2256	1	0	0	1	0	0	copy fasta	APLP2	chr11	130064894	130149805
APMAP_chr20_24957925_24997751	1/1	c0001	1251	223	52	52	73	9	35	copy fasta	APMAP	chr20	24957925	24997751
APMAP_chr20_24957925_24997751	0/0	c0002	1251	19	8	7	0	3	1	copy fasta	APMAP	chr20	24957925	24997751
APMAP_chr20_24957925_24997751	0/0	c0003	1251	12	11	1	0	0	0	copy fasta	APMAP	chr20	24957925	24997751
APMAP_chr20_24957925_24997751	0/0	c0004	1251	7	1	0	5	0	1	copy fasta	APMAP	chr20	24957925	24997751
APMAP_chr20_24957925_24997751	0/0	c0005	1251	6	6	0	0	0	0	copy fasta	APMAP	chr20	24957925	24997751
APMAP_chr20_24957925_24997751	0/0	c0006	1251	3	3	0	0	0	0	copy fasta	APMAP	chr20	24957925	24997751
APMAP_chr20_24957925_24997751	0/0	c0007	1251	3	1	2	0	0	0	copy fasta	APMAP	chr20	24957925	24997751
APMAP_chr20_24957925_24997751	0/0	c0008	1251	2	2	0	0	0	0	copy fasta	APMAP	chr20	24957925	24997751