JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
AREL1_chr14_74656256_74718080	0/0	c0013	2472	1	0	0	1	0	0	copy fasta	AREL1	chr14	74656256	74718080
ARF1_chr1_228077708_228104212	1/1	c0001	546	422	84	68	208	16	44	copy fasta	ARF1	chr1	228077708	228104212
ARF1_chr1_228077708_228104212	0/0	c0002	546	5	1	0	4	0	0	copy fasta	ARF1	chr1	228077708	228104212
ARF1_chr1_228077708_228104212	0/0	c0003	546	1	1	0	0	0	0	copy fasta	ARF1	chr1	228077708	228104212
ARF1_chr1_228077708_228104212	0/0	c0004	546	1	1	0	0	0	0	copy fasta	ARF1	chr1	228077708	228104212
ARF1_chr1_228077708_228104212	0/0	c0005	546	1	1	0	0	0	0	copy fasta	ARF1	chr1	228077708	228104212
ARF3_chr12_48930723_48962487	0/1	c0001	546	310	71	62	131	13	32	copy fasta	ARF3	chr12	48930723	48962487
ARF3_chr12_48930723_48962487	1/0	c0002	546	21	14	4	0	2	0	copy fasta	ARF3	chr12	48930723	48962487
ARF3_chr12_48930723_48962487	0/0	c0003	546	15	1	2	1	1	10	copy fasta	ARF3	chr12	48930723	48962487
ARF3_chr12_48930723_48962487	0/0	c0004	546	2	2	0	0	0	0	copy fasta	ARF3	chr12	48930723	48962487
ARF4_chr3_57566363_57602344	1/1	c0001	543	357	86	68	145	14	42	copy fasta	ARF4	chr3	57566363	57602344
ARF4_chr3_57566363_57602344	0/0	c0002	543	1	0	0	1	0	0	copy fasta	ARF4	chr3	57566363	57602344
ARF5_chr7_127583411_127596700	1/1	c0001	543	394	92	75	171	14	40	copy fasta	ARF5	chr7	127583411	127596700
ARF5_chr7_127583411_127596700	0/0	c0002	543	7	6	1	0	0	0	copy fasta	ARF5	chr7	127583411	127596700
ARF5_chr7_127583411_127596700	0/0	c0003	543	1	0	0	1	0	0	copy fasta	ARF5	chr7	127583411	127596700
ARF6_chr14_49888082_49902054	1/1	c0001	528	343	90	70	135	12	34	copy fasta	ARF6	chr14	49888082	49902054
ARF6_chr14_49888082_49902054	0/0	c0002	528	1	0	0	1	0	0	copy fasta	ARF6	chr14	49888082	49902054
ARFGAP1_chr20_63267813_63294790	1/1	c0001	1221	307	80	58	126	10	31	copy fasta	ARFGAP1	chr20	63267813	63294790
ARFGAP1_chr20_63267813_63294790	0/0	c0002	1222	12	3	5	3	0	1	copy fasta	ARFGAP1	chr20	63267813	63294790
ARFGAP1_chr20_63267813_63294790	0/0	c0003	1221	12	0	5	1	2	4	copy fasta	ARFGAP1	chr20	63267813	63294790
ARFGAP1_chr20_63267813_63294790	0/0	c0004	1221	2	0	0	2	0	0	copy fasta	ARFGAP1	chr20	63267813	63294790
ARFGAP1_chr20_63267813_63294790	0/0	c0005	1221	2	1	1	0	0	0	copy fasta	ARFGAP1	chr20	63267813	63294790
ARFGAP1_chr20_63267813_63294790	0/0	c0006	1221	2	0	0	0	2	0	copy fasta	ARFGAP1	chr20	63267813	63294790
ARFGAP1_chr20_63267813_63294790	0/0	c0007	1221	1	1	0	0	0	0	copy fasta	ARFGAP1	chr20	63267813	63294790
ARFGAP1_chr20_63267813_63294790	0/0	c0008	1221	1	1	0	0	0	0	copy fasta	ARFGAP1	chr20	63267813	63294790
ARFGAP1_chr20_63267813_63294790	0/0	c0009	1221	1	1	0	0	0	0	copy fasta	ARFGAP1	chr20	63267813	63294790
ARFGAP1_chr20_63267813_63294790	0/0	c0010	1221	1	1	0	0	0	0	copy fasta	ARFGAP1	chr20	63267813	63294790
ARFGAP1_chr20_63267813_63294790	0/0	c0011	1221	1	0	1	0	0	0	copy fasta	ARFGAP1	chr20	63267813	63294790
ARFGAP2_chr11_47159301_47181879	0/1	c0001	1566	238	21	51	130	4	31	copy fasta	ARFGAP2	chr11	47159301	47181879
ARFGAP2_chr11_47159301_47181879	0/0	c0002	1566	120	49	26	23	7	15	copy fasta	ARFGAP2	chr11	47159301	47181879
ARFGAP2_chr11_47159301_47181879	0/0	c0003	1566	3	3	0	0	0	0	copy fasta	ARFGAP2	chr11	47159301	47181879
ARFGAP2_chr11_47159301_47181879	1/0	c0004	1566	2	1	0	0	0	0	copy fasta	ARFGAP2	chr11	47159301	47181879
ARFGAP2_chr11_47159301_47181879	0/0	c0005	1566	1	0	0	0	0	1	copy fasta	ARFGAP2	chr11	47159301	47181879
ARFGAP2_chr11_47159301_47181879	0/0	c0006	1566	1	1	0	0	0	0	copy fasta	ARFGAP2	chr11	47159301	47181879
ARFGAP2_chr11_47159301_47181879	0/0	c0007	1566	1	0	0	0	1	0	copy fasta	ARFGAP2	chr11	47159301	47181879
ARFGAP2_chr11_47159301_47181879	0/0	c0008	1566	1	1	0	0	0	0	copy fasta	ARFGAP2	chr11	47159301	47181879
ARFGAP2_chr11_47159301_47181879	0/0	c0009	1566	1	0	0	1	0	0	copy fasta	ARFGAP2	chr11	47159301	47181879
ARFGAP2_chr11_47159301_47181879	0/0	c0010	1566	1	1	0	0	0	0	copy fasta	ARFGAP2	chr11	47159301	47181879
ARFGAP2_chr11_47159301_47181879	0/0	c0011	1566	1	0	0	1	0	0	copy fasta	ARFGAP2	chr11	47159301	47181879
ARFGAP2_chr11_47159301_47181879	0/0	c0012	1566	1	0	1	0	0	0	copy fasta	ARFGAP2	chr11	47159301	47181879
ARFGAP2_chr11_47159301_47181879	0/0	c0013	1566	1	0	0	1	0	0	copy fasta	ARFGAP2	chr11	47159301	47181879
ARFGAP2_chr11_47159301_47181879	0/0	c0014	1566	1	0	0	0	0	1	copy fasta	ARFGAP2	chr11	47159301	47181879
ARFGAP2_chr11_47159301_47181879	0/0	c0015	1566	1	1	0	0	0	0	copy fasta	ARFGAP2	chr11	47159301	47181879
ARFGAP3_chr22_42791502_42862273	0/0	c0001	1551	144	26	23	83	1	11	copy fasta	ARFGAP3	chr22	42791502	42862273
ARFGAP3_chr22_42791502_42862273	1/1	c0002	1551	86	4	15	47	3	15	copy fasta	ARFGAP3	chr22	42791502	42862273
ARFGAP3_chr22_42791502_42862273	0/0	c0003	1551	75	18	22	11	7	17	copy fasta	ARFGAP3	chr22	42791502	42862273
ARFGAP3_chr22_42791502_42862273	0/0	c0004	1551	13	13	0	0	0	0	copy fasta	ARFGAP3	chr22	42791502	42862273
ARFGAP3_chr22_42791502_42862273	0/0	c0005	1551	8	8	0	0	0	0	copy fasta	ARFGAP3	chr22	42791502	42862273
ARFGAP3_chr22_42791502_42862273	0/0	c0006	1551	7	0	0	7	0	0	copy fasta	ARFGAP3	chr22	42791502	42862273
ARFGAP3_chr22_42791502_42862273	0/0	c0007	1551	5	4	1	0	0	0	copy fasta	ARFGAP3	chr22	42791502	42862273