JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ARG1_chr6_131568226_131589329	0/0	c0007	969	1	0	0	0	0	1	copy fasta	ARG1	chr6	131568226	131589329
ARG2_chr14_67614920_67656708	1/1	c0001	1065	429	89	84	196	16	42	copy fasta	ARG2	chr14	67614920	67656708
ARG2_chr14_67614920_67656708	0/0	c0002	1065	6	6	0	0	0	0	copy fasta	ARG2	chr14	67614920	67656708
ARG2_chr14_67614920_67656708	0/0	c0003	1065	2	2	0	0	0	0	copy fasta	ARG2	chr14	67614920	67656708
ARG2_chr14_67614920_67656708	0/0	c0004	1065	1	1	0	0	0	0	copy fasta	ARG2	chr14	67614920	67656708
ARGFX_chr3_121562949_121595622	1/0	c0001	948	312	67	52	147	10	35	copy fasta	ARGFX	chr3	121562949	121595622
ARGFX_chr3_121562949_121595622	0/1	c0002	948	66	12	28	14	5	6	copy fasta	ARGFX	chr3	121562949	121595622
ARGFX_chr3_121562949_121595622	0/0	c0003	948	15	15	0	0	0	0	copy fasta	ARGFX	chr3	121562949	121595622
ARGFX_chr3_121562949_121595622	0/0	c0004	948	7	0	1	6	0	0	copy fasta	ARGFX	chr3	121562949	121595622
ARGFX_chr3_121562949_121595622	0/0	c0005	948	3	0	3	0	0	0	copy fasta	ARGFX	chr3	121562949	121595622
ARGFX_chr3_121562949_121595622	0/0	c0006	948	2	0	0	2	0	0	copy fasta	ARGFX	chr3	121562949	121595622
ARGFX_chr3_121562949_121595622	0/0	c0007	948	1	0	0	0	0	1	copy fasta	ARGFX	chr3	121562949	121595622
ARGFX_chr3_121562949_121595622	0/0	c0008	948	1	0	0	0	1	0	copy fasta	ARGFX	chr3	121562949	121595622
ARGFX_chr3_121562949_121595622	0/0	c0009	948	1	0	0	1	0	0	copy fasta	ARGFX	chr3	121562949	121595622
ARGFX_chr3_121562949_121595622	0/0	c0010	948	1	0	0	1	0	0	copy fasta	ARGFX	chr3	121562949	121595622
ARGFX_chr3_121562949_121595622	0/0	c0011	948	1	0	0	1	0	0	copy fasta	ARGFX	chr3	121562949	121595622
ARGLU1_chr13_106536673_106573137	1/1	c0001	822	375	89	70	158	14	42	copy fasta	ARGLU1	chr13	106536673	106573137
ARGLU1_chr13_106536673_106573137	0/0	c0002	822	1	1	0	0	0	0	copy fasta	ARGLU1	chr13	106536673	106573137
ARHGAP10_chr4_147727088_148077776	1/1	c0001	2361	73	38	13	16	0	4	copy fasta	ARHGAP10	chr4	147727088	148077776
ARHGAP10_chr4_147727088_148077776	0/0	c0002	2361	11	2	0	4	0	5	copy fasta	ARHGAP10	chr4	147727088	148077776
ARHGAP10_chr4_147727088_148077776	0/0	c0003	2361	5	1	1	2	0	1	copy fasta	ARHGAP10	chr4	147727088	148077776
ARHGAP10_chr4_147727088_148077776	0/0	c0004	2361	3	3	0	0	0	0	copy fasta	ARHGAP10	chr4	147727088	148077776
ARHGAP10_chr4_147727088_148077776	0/0	c0005	2361	3	3	0	0	0	0	copy fasta	ARHGAP10	chr4	147727088	148077776
ARHGAP10_chr4_147727088_148077776	0/0	c0006	2361	3	3	0	0	0	0	copy fasta	ARHGAP10	chr4	147727088	148077776
ARHGAP10_chr4_147727088_148077776	0/0	c0007	2361	2	2	0	0	0	0	copy fasta	ARHGAP10	chr4	147727088	148077776
ARHGAP10_chr4_147727088_148077776	0/0	c0008	2361	2	2	0	0	0	0	copy fasta	ARHGAP10	chr4	147727088	148077776
ARHGAP10_chr4_147727088_148077776	0/0	c0009	2361	2	2	0	0	0	0	copy fasta	ARHGAP10	chr4	147727088	148077776
ARHGAP10_chr4_147727088_148077776	0/0	c0010	2361	1	1	0	0	0	0	copy fasta	ARHGAP10	chr4	147727088	148077776
ARHGAP10_chr4_147727088_148077776	0/0	c0011	2361	1	1	0	0	0	0	copy fasta	ARHGAP10	chr4	147727088	148077776
ARHGAP11A_chr15_32610504_32644941	0/1	c0001	3072	306	68	56	134	12	35	copy fasta	ARHGAP11A	chr15	32610504	32644941
ARHGAP11A_chr15_32610504_32644941	0/0	c0002	3072	7	5	2	0	0	0	copy fasta	ARHGAP11A	chr15	32610504	32644941
ARHGAP11A_chr15_32610504_32644941	0/0	c0003	3072	5	0	1	4	0	0	copy fasta	ARHGAP11A	chr15	32610504	32644941
ARHGAP11A_chr15_32610504_32644941	0/0	c0004	3072	3	1	0	0	2	0	copy fasta	ARHGAP11A	chr15	32610504	32644941
ARHGAP11A_chr15_32610504_32644941	0/0	c0005	3072	3	3	0	0	0	0	copy fasta	ARHGAP11A	chr15	32610504	32644941
ARHGAP11A_chr15_32610504_32644941	0/0	c0006	3072	2	2	0	0	0	0	copy fasta	ARHGAP11A	chr15	32610504	32644941
ARHGAP11A_chr15_32610504_32644941	0/0	c0007	3072	1	1	0	0	0	0	copy fasta	ARHGAP11A	chr15	32610504	32644941
ARHGAP11A_chr15_32610504_32644941	0/0	c0008	3072	1	1	0	0	0	0	copy fasta	ARHGAP11A	chr15	32610504	32644941
ARHGAP11A_chr15_32610504_32644941	0/0	c0009	3072	1	1	0	0	0	0	copy fasta	ARHGAP11A	chr15	32610504	32644941
ARHGAP11A_chr15_32610504_32644941	0/0	c0010	3072	1	0	1	0	0	0	copy fasta	ARHGAP11A	chr15	32610504	32644941
ARHGAP11A_chr15_32610504_32644941	0/0	c0011	3072	1	0	0	0	0	1	copy fasta	ARHGAP11A	chr15	32610504	32644941
ARHGAP11A_chr15_32610504_32644941	0/0	c0012	3072	1	0	0	1	0	0	copy fasta	ARHGAP11A	chr15	32610504	32644941
ARHGAP11A_chr15_32610504_32644941	0/0	c0013	3072	1	0	0	1	0	0	copy fasta	ARHGAP11A	chr15	32610504	32644941
ARHGAP11A_chr15_32610504_32644941	0/0	c0014	3072	1	0	0	1	0	0	copy fasta	ARHGAP11A	chr15	32610504	32644941
ARHGAP11A_chr15_32610504_32644941	0/0	c0015	3072	1	0	0	1	0	0	copy fasta	ARHGAP11A	chr15	32610504	32644941
ARHGAP11B_chr15_30621128_30643810	0/1	c0001	804	237	84	46	61	14	31	copy fasta	ARHGAP11B	chr15	30621128	30643810
ARHGAP11B_chr15_30621128_30643810	0/0	c0002	804	7	6	1	0	0	0	copy fasta	ARHGAP11B	chr15	30621128	30643810
ARHGAP11B_chr15_30621128_30643810	0/0	c0003	804	1	0	0	1	0	0	copy fasta	ARHGAP11B	chr15	30621128	30643810
ARHGAP11B_chr15_30621128_30643810	0/0	c0004	804	1	0	0	0	0	1	copy fasta	ARHGAP11B	chr15	30621128	30643810
ARHGAP11B_chr15_30621128_30643810	0/0	c0005	804	1	0	1	0	0	0	copy fasta	ARHGAP11B	chr15	30621128	30643810
ARHGAP12_chr10_31800398_31933831	1/0	c0001	2541	213	65	43	75	6	23	copy fasta	ARHGAP12	chr10	31800398	31933831