JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ARHGAP21_chr10_24578614_24728887	0/1	c0025	5877	1	0	0	0	0	0	copy fasta	ARHGAP21	chr10	24578614	24728887
ARHGAP21_chr10_24578614_24728887	0/0	c0026	5877	1	0	1	0	0	0	copy fasta	ARHGAP21	chr10	24578614	24728887
ARHGAP21_chr10_24578614_24728887	0/0	c0027	5877	1	1	0	0	0	0	copy fasta	ARHGAP21	chr10	24578614	24728887
ARHGAP21_chr10_24578614_24728887	0/0	c0028	5931	1	0	0	1	0	0	copy fasta	ARHGAP21	chr10	24578614	24728887
ARHGAP21_chr10_24578614_24728887	0/0	c0029	5931	1	0	0	1	0	0	copy fasta	ARHGAP21	chr10	24578614	24728887
ARHGAP21_chr10_24578614_24728887	0/0	c0030	5877	1	0	0	1	0	0	copy fasta	ARHGAP21	chr10	24578614	24728887
ARHGAP22_chr10_48441036_48610073	0/1	c0001	2097	180	32	52	55	11	29	copy fasta	ARHGAP22	chr10	48441036	48610073
ARHGAP22_chr10_48441036_48610073	0/0	c0002	2097	35	17	3	9	0	6	copy fasta	ARHGAP22	chr10	48441036	48610073
ARHGAP22_chr10_48441036_48610073	1/0	c0003	2097	20	18	1	0	0	0	copy fasta	ARHGAP22	chr10	48441036	48610073
ARHGAP22_chr10_48441036_48610073	0/0	c0004	2097	6	5	1	0	0	0	copy fasta	ARHGAP22	chr10	48441036	48610073
ARHGAP22_chr10_48441036_48610073	0/0	c0005	2097	5	5	0	0	0	0	copy fasta	ARHGAP22	chr10	48441036	48610073
ARHGAP22_chr10_48441036_48610073	0/0	c0006	2097	5	1	3	0	1	0	copy fasta	ARHGAP22	chr10	48441036	48610073
ARHGAP22_chr10_48441036_48610073	0/0	c0007	2097	3	2	1	0	0	0	copy fasta	ARHGAP22	chr10	48441036	48610073
ARHGAP22_chr10_48441036_48610073	0/0	c0008	2097	2	2	0	0	0	0	copy fasta	ARHGAP22	chr10	48441036	48610073
ARHGAP22_chr10_48441036_48610073	0/0	c0009	2097	2	0	0	0	0	2	copy fasta	ARHGAP22	chr10	48441036	48610073
ARHGAP22_chr10_48441036_48610073	0/0	c0010	2097	1	0	0	0	0	1	copy fasta	ARHGAP22	chr10	48441036	48610073
ARHGAP22_chr10_48441036_48610073	0/0	c0011	2097	1	1	0	0	0	0	copy fasta	ARHGAP22	chr10	48441036	48610073
ARHGAP22_chr10_48441036_48610073	0/0	c0012	2097	1	1	0	0	0	0	copy fasta	ARHGAP22	chr10	48441036	48610073
ARHGAP22_chr10_48441036_48610073	0/0	c0013	2097	1	1	0	0	0	0	copy fasta	ARHGAP22	chr10	48441036	48610073
ARHGAP22_chr10_48441036_48610073	0/0	c0014	2097	1	1	0	0	0	0	copy fasta	ARHGAP22	chr10	48441036	48610073
ARHGAP22_chr10_48441036_48610073	0/0	c0015	2097	1	0	0	1	0	0	copy fasta	ARHGAP22	chr10	48441036	48610073
ARHGAP22_chr10_48441036_48610073	0/0	c0016	2097	1	0	0	1	0	0	copy fasta	ARHGAP22	chr10	48441036	48610073
ARHGAP22_chr10_48441036_48610073	0/0	c0017	2097	1	0	0	1	0	0	copy fasta	ARHGAP22	chr10	48441036	48610073
ARHGAP22_chr10_48441036_48610073	0/0	c0018	2097	1	0	1	0	0	0	copy fasta	ARHGAP22	chr10	48441036	48610073
ARHGAP22_chr10_48441036_48610073	0/0	c0019	2097	1	1	0	0	0	0	copy fasta	ARHGAP22	chr10	48441036	48610073
ARHGAP22_chr10_48441036_48610073	0/0	c0020	2097	1	1	0	0	0	0	copy fasta	ARHGAP22	chr10	48441036	48610073
ARHGAP22_chr10_48441036_48610073	0/0	c0021	2097	1	0	0	1	0	0	copy fasta	ARHGAP22	chr10	48441036	48610073
ARHGAP23_chr17_38423464_38517385	0/1	c0001	4476	128	17	32	53	10	15	copy fasta	ARHGAP23	chr17	38423464	38517385
ARHGAP23_chr17_38423464_38517385	0/0	c0002	4476	24	1	4	10	0	9	copy fasta	ARHGAP23	chr17	38423464	38517385
ARHGAP23_chr17_38423464_38517385	0/0	c0003	4476	21	0	6	10	1	4	copy fasta	ARHGAP23	chr17	38423464	38517385
ARHGAP23_chr17_38423464_38517385	0/0	c0004	4476	20	10	6	1	2	1	copy fasta	ARHGAP23	chr17	38423464	38517385
ARHGAP23_chr17_38423464_38517385	0/0	c0005	4476	17	16	1	0	0	0	copy fasta	ARHGAP23	chr17	38423464	38517385
ARHGAP23_chr17_38423464_38517385	0/0	c0006	4476	7	0	0	7	0	0	copy fasta	ARHGAP23	chr17	38423464	38517385
ARHGAP23_chr17_38423464_38517385	0/0	c0007	4476	6	2	2	1	0	1	copy fasta	ARHGAP23	chr17	38423464	38517385
ARHGAP23_chr17_38423464_38517385	0/0	c0008	4476	5	0	1	2	1	1	copy fasta	ARHGAP23	chr17	38423464	38517385
ARHGAP23_chr17_38423464_38517385	0/0	c0009	4476	5	4	0	0	0	1	copy fasta	ARHGAP23	chr17	38423464	38517385
ARHGAP23_chr17_38423464_38517385	0/0	c0010	4476	5	3	2	0	0	0	copy fasta	ARHGAP23	chr17	38423464	38517385
ARHGAP23_chr17_38423464_38517385	0/0	c0011	4476	3	3	0	0	0	0	copy fasta	ARHGAP23	chr17	38423464	38517385
ARHGAP23_chr17_38423464_38517385	0/0	c0012	4476	3	3	0	0	0	0	copy fasta	ARHGAP23	chr17	38423464	38517385
ARHGAP23_chr17_38423464_38517385	0/0	c0013	4476	3	3	0	0	0	0	copy fasta	ARHGAP23	chr17	38423464	38517385
ARHGAP23_chr17_38423464_38517385	0/0	c0014	4476	2	2	0	0	0	0	copy fasta	ARHGAP23	chr17	38423464	38517385
ARHGAP23_chr17_38423464_38517385	0/0	c0015	4477	2	0	1	1	0	0	copy fasta	ARHGAP23	chr17	38423464	38517385
ARHGAP23_chr17_38423464_38517385	0/0	c0016	4476	2	2	0	0	0	0	copy fasta	ARHGAP23	chr17	38423464	38517385
ARHGAP23_chr17_38423464_38517385	0/0	c0017	4476	2	2	0	0	0	0	copy fasta	ARHGAP23	chr17	38423464	38517385
ARHGAP23_chr17_38423464_38517385	0/0	c0018	4476	2	2	0	0	0	0	copy fasta	ARHGAP23	chr17	38423464	38517385
ARHGAP23_chr17_38423464_38517385	0/0	c0019	4476	2	1	1	0	0	0	copy fasta	ARHGAP23	chr17	38423464	38517385
ARHGAP23_chr17_38423464_38517385	0/0	c0020	4476	2	1	1	0	0	0	copy fasta	ARHGAP23	chr17	38423464	38517385
ARHGAP23_chr17_38423464_38517385	0/0	c0021	4476	2	2	0	0	0	0	copy fasta	ARHGAP23	chr17	38423464	38517385
ARHGAP23_chr17_38423464_38517385	0/0	c0022	4477	2	0	0	2	0	0	copy fasta	ARHGAP23	chr17	38423464	38517385
ARHGAP23_chr17_38423464_38517385	0/0	c0023	4477	2	0	0	1	0	1	copy fasta	ARHGAP23	chr17	38423464	38517385