JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ARHGAP25_chr2_68729811_68831833	0/0	c0001	1941	138	38	22	63	6	9	copy fasta	ARHGAP25	chr2	68729811	68831833
ARHGAP25_chr2_68729811_68831833	1/1	c0002	1941	98	20	24	22	6	24	copy fasta	ARHGAP25	chr2	68729811	68831833
ARHGAP25_chr2_68729811_68831833	0/0	c0003	1941	88	10	19	48	5	6	copy fasta	ARHGAP25	chr2	68729811	68831833
ARHGAP25_chr2_68729811_68831833	0/0	c0004	1941	10	9	1	0	0	0	copy fasta	ARHGAP25	chr2	68729811	68831833
ARHGAP25_chr2_68729811_68831833	0/0	c0005	1941	5	5	0	0	0	0	copy fasta	ARHGAP25	chr2	68729811	68831833
ARHGAP25_chr2_68729811_68831833	0/0	c0006	1941	4	0	0	4	0	0	copy fasta	ARHGAP25	chr2	68729811	68831833
ARHGAP25_chr2_68729811_68831833	0/0	c0007	1941	4	2	2	0	0	0	copy fasta	ARHGAP25	chr2	68729811	68831833
ARHGAP25_chr2_68729811_68831833	0/0	c0008	1941	3	2	1	0	0	0	copy fasta	ARHGAP25	chr2	68729811	68831833
ARHGAP25_chr2_68729811_68831833	0/0	c0009	1941	3	2	1	0	0	0	copy fasta	ARHGAP25	chr2	68729811	68831833
ARHGAP25_chr2_68729811_68831833	0/0	c0010	1941	2	2	0	0	0	0	copy fasta	ARHGAP25	chr2	68729811	68831833
ARHGAP25_chr2_68729811_68831833	0/0	c0011	1941	2	2	0	0	0	0	copy fasta	ARHGAP25	chr2	68729811	68831833
ARHGAP25_chr2_68729811_68831833	0/0	c0012	1941	2	0	0	0	1	1	copy fasta	ARHGAP25	chr2	68729811	68831833
ARHGAP25_chr2_68729811_68831833	0/0	c0013	1941	2	0	0	2	0	0	copy fasta	ARHGAP25	chr2	68729811	68831833
ARHGAP25_chr2_68729811_68831833	0/0	c0014	1941	1	0	0	1	0	0	copy fasta	ARHGAP25	chr2	68729811	68831833
ARHGAP25_chr2_68729811_68831833	0/0	c0015	1941	1	0	0	1	0	0	copy fasta	ARHGAP25	chr2	68729811	68831833
ARHGAP25_chr2_68729811_68831833	0/0	c0016	1941	1	0	0	1	0	0	copy fasta	ARHGAP25	chr2	68729811	68831833
ARHGAP25_chr2_68729811_68831833	0/0	c0017	1941	1	1	0	0	0	0	copy fasta	ARHGAP25	chr2	68729811	68831833
ARHGAP25_chr2_68729811_68831833	0/0	c0018	1941	1	1	0	0	0	0	copy fasta	ARHGAP25	chr2	68729811	68831833
ARHGAP25_chr2_68729811_68831833	0/0	c0019	1941	1	1	0	0	0	0	copy fasta	ARHGAP25	chr2	68729811	68831833
ARHGAP25_chr2_68729811_68831833	0/0	c0020	1941	1	1	0	0	0	0	copy fasta	ARHGAP25	chr2	68729811	68831833
ARHGAP26_chr5_142765377_143234007	0/0	c0001	2280	119	62	8	36	1	12	copy fasta	ARHGAP26	chr5	142765377	143234007
ARHGAP26_chr5_142765377_143234007	0/1	c0002	2280	36	6	10	11	0	8	copy fasta	ARHGAP26	chr5	142765377	143234007
ARHGAP26_chr5_142765377_143234007	0/0	c0003	2280	36	0	0	36	0	0	copy fasta	ARHGAP26	chr5	142765377	143234007
ARHGAP26_chr5_142765377_143234007	0/0	c0004	2280	2	0	0	2	0	0	copy fasta	ARHGAP26	chr5	142765377	143234007
ARHGAP26_chr5_142765377_143234007	1/0	c0005	2280	1	0	0	0	0	0	copy fasta	ARHGAP26	chr5	142765377	143234007
ARHGAP26_chr5_142765377_143234007	0/0	c0006	2280	1	0	0	0	1	0	copy fasta	ARHGAP26	chr5	142765377	143234007
ARHGAP26_chr5_142765377_143234007	0/0	c0007	2280	1	1	0	0	0	0	copy fasta	ARHGAP26	chr5	142765377	143234007
ARHGAP26_chr5_142765377_143234007	0/0	c0008	2280	1	1	0	0	0	0	copy fasta	ARHGAP26	chr5	142765377	143234007
ARHGAP26_chr5_142765377_143234007	0/0	c0009	2280	1	0	0	1	0	0	copy fasta	ARHGAP26	chr5	142765377	143234007
ARHGAP27_chr17_45388908_45437870	0/1	c0001	2670	177	38	36	69	9	24	copy fasta	ARHGAP27	chr17	45388908	45437870
ARHGAP27_chr17_45388908_45437870	0/0	c0002	2670	99	29	17	41	3	9	copy fasta	ARHGAP27	chr17	45388908	45437870
ARHGAP27_chr17_45388908_45437870	0/0	c0003	2670	28	2	6	20	0	0	copy fasta	ARHGAP27	chr17	45388908	45437870
ARHGAP27_chr17_45388908_45437870	0/0	c0004	2670	20	1	8	1	4	6	copy fasta	ARHGAP27	chr17	45388908	45437870
ARHGAP27_chr17_45388908_45437870	0/0	c0005	2670	4	0	4	0	0	0	copy fasta	ARHGAP27	chr17	45388908	45437870
ARHGAP27_chr17_45388908_45437870	0/0	c0006	2670	4	3	1	0	0	0	copy fasta	ARHGAP27	chr17	45388908	45437870
ARHGAP27_chr17_45388908_45437870	0/0	c0007	2670	3	3	0	0	0	0	copy fasta	ARHGAP27	chr17	45388908	45437870
ARHGAP27_chr17_45388908_45437870	0/0	c0008	2670	2	0	0	2	0	0	copy fasta	ARHGAP27	chr17	45388908	45437870
ARHGAP27_chr17_45388908_45437870	0/0	c0009	2670	2	2	0	0	0	0	copy fasta	ARHGAP27	chr17	45388908	45437870
ARHGAP27_chr17_45388908_45437870	0/0	c0010	2670	1	0	0	1	0	0	copy fasta	ARHGAP27	chr17	45388908	45437870
ARHGAP27_chr17_45388908_45437870	0/0	c0011	2670	1	0	0	1	0	0	copy fasta	ARHGAP27	chr17	45388908	45437870
ARHGAP27_chr17_45388908_45437870	0/0	c0012	2670	1	0	0	0	0	1	copy fasta	ARHGAP27	chr17	45388908	45437870
ARHGAP27_chr17_45388908_45437870	0/0	c0013	2670	1	1	0	0	0	0	copy fasta	ARHGAP27	chr17	45388908	45437870
ARHGAP27_chr17_45388908_45437870	0/0	c0014	2670	1	1	0	0	0	0	copy fasta	ARHGAP27	chr17	45388908	45437870
ARHGAP27_chr17_45388908_45437870	0/0	c0015	2670	1	1	0	0	0	0	copy fasta	ARHGAP27	chr17	45388908	45437870
ARHGAP27_chr17_45388908_45437870	0/0	c0016	2670	1	1	0	0	0	0	copy fasta	ARHGAP27	chr17	45388908	45437870
ARHGAP27_chr17_45388908_45437870	0/0	c0017	2670	1	0	0	1	0	0	copy fasta	ARHGAP27	chr17	45388908	45437870
ARHGAP28_chr18_6724716_6920716	0/1	c0001	2190	85	32	10	24	6	12	copy fasta	ARHGAP28	chr18	6724716	6920716
ARHGAP28_chr18_6724716_6920716	1/0	c0002	2190	45	7	5	23	1	8	copy fasta	ARHGAP28	chr18	6724716	6920716
ARHGAP28_chr18_6724716_6920716	0/0	c0003	2190	36	18	10	1	2	5	copy fasta	ARHGAP28	chr18	6724716	6920716
ARHGAP28_chr18_6724716_6920716	0/0	c0004	2190	36	1	4	30	0	1	copy fasta	ARHGAP28	chr18	6724716	6920716